RNA id: TU792306


Basic Information

Item Value
RNA id TU792306
length 787
lncRNA type intronic
GC content 0.37
exon number 1
gene id G696069
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 30847385 ~ 30848171 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcatTAAACTGCAGGTTCTTGTAACCAAATGTAATAACGAAAGCCTCACCACCTGATGACATTGTTGCTGATGTACGATTGTTTCGCTGTAGTACTACAGTGACGTGCGAATGAGGCAGACGTTCTAGAACGTTTTTCAGCCTTCTGTATTAAACTACTTTCTCTGTGTTACAACACCGCCTCTTCCATGTTATCTGACAGAAAATGCACAACAAAAACGTATCCCAGTACTGACTTGCATTGTTCACGAGTCTCATCTAAGGTCCAAGTCAAGTTTCAAGTCAATTGATCACTACAAGCCAGAGATAGAAATTCGAGTCCGAGTCTCAGAAAATGACTTGCAACTTGACTTGGACTCGGATTTCTATCTctggcttgtagcgtcatacccaagaagattcaaggctgtaatcgctgccaaaggtgcttcaacaaagcactgagtgaagggtctgaatacttatgtgaatgtgatatttcattttatttattttttatgaatttgcaaacatttcaaaaatgtttttgtcattacgaggtattgtgtgtagattgatgagggaaaacaaatatttagaataaggctgtaacttaacaaaatgtggaaaaagtctaggggtctgaatacttttagaaTGCCCCGTATATGGATTACCTAGAAGCAACAATCATAGCAAAATATCAACATATTTCCTATCAAAACATCATTAGACAAGTAAAATTACAGTTCTTTTCCATATAGTGTAAAATGTACATATTTTTCCCCTTAATGAAGTAATGTGCAGCT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU792298 lncRNA downstream 8740 30838409 ~ 30838645 (-) True G696061
TU792295 lncRNA downstream 19135 30828040 ~ 30828250 (-) True G696058
TU792293 lncRNA downstream 19402 30826637 ~ 30827983 (-) True G696056
TU792292 lncRNA downstream 19580 30826637 ~ 30827805 (-) False G696056
TU792285 lncRNA downstream 37417 30809513 ~ 30809968 (-) True G696049
TU792348 lncRNA upstream 49321 30897492 ~ 30898394 (-) True G696101
TU792352 lncRNA upstream 56427 30904598 ~ 30905612 (-) True G696105
TU792355 lncRNA upstream 57596 30905767 ~ 30907643 (-) True G696108
TU792360 lncRNA upstream 69889 30918060 ~ 30919501 (-) True G696113
TU792361 lncRNA upstream 73040 30921211 ~ 30921442 (-) True G696114
XR_005052854.1 mRNA downstream 78040 30767251 ~ 30769345 (-) True LOC118965507
XM_036985273.1 mRNA downstream 159907 30529289 ~ 30687478 (-) True LOC110529771
XM_036985267.1 mRNA downstream 427773 30292451 ~ 30419612 (-) False LOC110529226
XM_021612293.2 mRNA upstream 63960 30912131 ~ 30989709 (-) True LOC110529773
XM_021612294.2 mRNA upstream 176205 31024376 ~ 31044032 (-) False LOC110529774
XM_036985274.1 mRNA upstream 176209 31024380 ~ 31044029 (-) False LOC110529774
XM_021612295.2 mRNA upstream 176210 31024381 ~ 31043996 (-) True LOC110529774
XM_021612296.2 mRNA upstream 199339 31047510 ~ 31051722 (-) True LOC110529775
TU792305 other downstream 176 30846902 ~ 30847209 (-) True G696068
TU790962 other downstream 785217 30001763 ~ 30062168 (-) False G694858
TU790963 other downstream 785217 30038588 ~ 30062168 (-) True G694858
TU789639 other downstream 1888553 28958395 ~ 28958832 (-) True G693665
TU789291 other downstream 2252954 28593341 ~ 28594431 (-) True G693383
TU792310 other upstream 6936 30855107 ~ 30855407 (-) True G696073
TU792778 other upstream 629183 31477354 ~ 31478027 (-) True G696499
TU792983 other upstream 809555 31657726 ~ 31679735 (-) True LOC110529793
TU793919 other upstream 1366315 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other upstream 1366315 32214486 ~ 32217549 (-) True LOC110529804

Expression Profile