RNA id: TU792352


Basic Information

Item Value
RNA id TU792352
length 1015
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G696105
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 30904598 ~ 30905612 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATGATATTACAACCAAATAGTTAACATGTATTTAACAATCCCTTTGAAACGGTGCGCAGTTGTCAATGGTTTGAGCGGAGCTGGGGGTCTCCTTGCCTCCCCAGCAGGCAAATTGAATGCTCTGCATCTTATTGTGAGGTTTTATTAATAATGACCTATTGGTGTGTATtctcccccaaaaaatattttactGAAAATATGATAAATACCAGAATTCCTATGATAACCAATATACTTTATGTGCAAGTTGTTATGATATACTAGATGCTATACCCTTTGGTTTAAAGTAACTTAAAGGATTCGGGCATGCTTTTTTGATGCATGCGGCCATAGCCCCTACCACTCCCATTGTTTCACTAACATAGATGCTAACGCTGGCTGCGGGGTAAGTAGATAAAGAAAACTAAGCCATAGTTTTGGTCAATGTCTCTCAGGGTTAAATTATTTCAAATGTTGGTGTACTTCCCCCTTTAAATGGCAGTGAATTTTACCACAAATTAATATTTTCTTCAAGAAACTGAAAACTAAATGATACTATAGTAAAATGGTAAATGAGCTTTTCAGTACTAATTGTACTTTGGAAAAAAGCTGCACATTAtatgaaggaaaaatacattttctttttgCAAAATATGTAAATTAACTGTAATATTGCTAAAATAATAGTCCAGATAACAATAATGACATGTCTAATGATGTTTTGATAATAAATAAGGTGATCTTTTGCTGTGATTGTTAATGAATAATTTCTTATTAGGGTCAAAATGTCACTTGATGGTGAAGAAGTTTCACTTTTCACTTTGTCACGCTGTTAGATTGAGGTTTACGGTATTTTTTGCTCTTTGCACAATTTGTTTGCGCTATGAAAAtgttgcccacacacacacacacacacacacaaacgtttaATAACTAACTATAAGTACTGAACATCGGAGTGGAACCATATGTAATTCTCTTGAATGAATGCGACCAGATGCACTGTGAGCTCAATGTGATGTGGGAGTCATTTGT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU792348 lncRNA downstream 6204 30897492 ~ 30898394 (-) True G696101
TU792306 lncRNA downstream 56427 30847385 ~ 30848171 (-) True G696069
TU792298 lncRNA downstream 65953 30838409 ~ 30838645 (-) True G696061
TU792295 lncRNA downstream 76348 30828040 ~ 30828250 (-) True G696058
TU792293 lncRNA downstream 76615 30826637 ~ 30827983 (-) True G696056
TU792355 lncRNA upstream 155 30905767 ~ 30907643 (-) True G696108
TU792360 lncRNA upstream 12448 30918060 ~ 30919501 (-) True G696113
TU792361 lncRNA upstream 15599 30921211 ~ 30921442 (-) True G696114
TU792362 lncRNA upstream 16058 30921670 ~ 30921960 (-) True G696115
TU792367 lncRNA upstream 25908 30931520 ~ 30931743 (-) True G696120
XR_005052854.1 mRNA downstream 135253 30767251 ~ 30769345 (-) True LOC118965507
XM_036985273.1 mRNA downstream 217120 30529289 ~ 30687478 (-) True LOC110529771
XM_036985267.1 mRNA downstream 484986 30292451 ~ 30419612 (-) False LOC110529226
XM_021612293.2 mRNA upstream 6519 30912131 ~ 30989709 (-) True LOC110529773
XM_021612294.2 mRNA upstream 118764 31024376 ~ 31044032 (-) False LOC110529774
XM_036985274.1 mRNA upstream 118768 31024380 ~ 31044029 (-) False LOC110529774
XM_021612295.2 mRNA upstream 118769 31024381 ~ 31043996 (-) True LOC110529774
XM_021612296.2 mRNA upstream 141898 31047510 ~ 31051722 (-) True LOC110529775
TU792310 other downstream 49191 30855107 ~ 30855407 (-) True G696073
TU792305 other downstream 57389 30846902 ~ 30847209 (-) True G696068
TU790962 other downstream 842430 30001763 ~ 30062168 (-) False G694858
TU790963 other downstream 842430 30038588 ~ 30062168 (-) True G694858
TU789639 other downstream 1945766 28958395 ~ 28958832 (-) True G693665
TU792778 other upstream 571742 31477354 ~ 31478027 (-) True G696499
TU792983 other upstream 752114 31657726 ~ 31679735 (-) True LOC110529793
TU793919 other upstream 1308874 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other upstream 1308874 32214486 ~ 32217549 (-) True LOC110529804
TU794118 other upstream 1593187 32498799 ~ 32499410 (-) True G697774

Expression Profile