RNA id: TU792478


Basic Information

Item Value
RNA id TU792478
length 3505
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G696224
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 31094348 ~ 31097930 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTCTGGCCTTCAACGGTTTGTTTTACCCTGCCATCAGTGGTCAGTCTGGTACAGAACAGGGCAGGCAGCAGTAGTTGcagttggcaggtagcctagcccaGGGTCCTATTCATTGGGGCACACTAGCAAACAGCTTTAAAGCGTttttttattttagatttttttttattttttatgtattggACCAACTCCAGGTAGGGacttcctgtttcagtctgtttggtgcctaatgaacaagaCCCAGGGCTGGGTGTGTTGGGGGAAACAGTCCCATGAGCGCATAGTTTCAGAACACTTAAAACAGCTAGCTAGAGGAATGATTGGTGGCTTTTTCCTGGCCCTCTTTCTTCATCTGTTGACACTAGAAAAACCAGCTGTGTCATTGTCCGCCGAGGGGGAaaatggggaggggagaggtgggacTTCCAAAGCACTGCATGAGACGTCACCCGAGTCGACCCCTCCCTGCCCCTGGAAATGTTAGGAGTGTGTCTGTCAGCCAGGTAATTTTTCAGACAGCATCTGGAGCTCAAACTCAAGCCACTGGTATGTGTGAGTGCACATTATTGCAAATGGGCTGACTGAGTCAGTCAAAAACAGGTTTGAGCACATACCCAGAATGTAGTGGTCTCAAAGACTTGATCTCAGATCAGTTTTGCTTTTCACCTCTTAAGGTCCAGGTTAGGATTGGCGTAGGCTAAAGATGATCCCTAGATCTGTGTTTTAGGGCGAGTTTTAAGTCGAGCTGTGAATGCCACCTGCTGGTTCTCGTTAGTGTTCTAATGAGGCccccccactgggcacacacactggttgaatcaaagttgtttccacgtcatttcaatgaaaggactttgaaccaatgtggaatagatgttgaagtGGACCAGTGATGCGTGGCCAGTCAGGTGAGGAGGTTCCGTTGACCAAGGTCACGTTTCATTTTATTACAGTCATCATTTCTATTCACAAAGTTAACCCCTTCAGAAGCAAGCCTTAGTATACCCATTTTATATATTCAATTCAATAAATATACAGACATCATGGGGACGATAATGCGGAGTTCCATAGTTTGAACTTCCCAGAATCAAATAGTTTCCTATTGCTGATCAACAGTGTCGTCACATCTCCTGAATCATCTCAAATAAAGGATCTAGTGTTACAGATGAGATCCTCAAGTCAAATCAATGGAATGAAGCCAGAAAAGGTCAAAGCATGTTAATTTATAAGGGCTGTATAGGCACTGTTATTTCAATTGGTGAGGGGGCAAGGGTGTACCAGACCGCATCCTATTAACAAGCGTTCACATTGTGCACTCGTCAAAACattgtgctgtttttcagcagtTAAAATCGTACCTATTTGGCAAAGAAAACATTCATTGAGCATCAATCGTTACAAAATGAAACTTGAGGGACCGGACGTGGAGACACTGTACAGAGAAGCAGCTCATTTTGGAGGTTAATACTGAATGGAactgtgatgatgatgagggaTAGAAACACCAAAATAAGCTTGTTTTTCAGTTCCTTGCACTAAGGTCTGATATTTGTAGACTTGTTTCCCAAAATTGCCCAATTGAAACAATTATTAAATGTTTCGGGGCCAAGtcttcccctaggtacagatctgggatcagcttctcctcccccaatcctaaccttaaaggtccaatgcagccatttttatctcaatatcaaatcacttctgggtaacaattaagtaccttactgtgattctttttgaccattttaattgaaaacaaacaaaaatagcttcttagcaaagagcagtGGTctgagctgttattggcagagaggtctGAAAGTCTTATTTACTGCCTGGTAATGTCACCAGGCCAAAACGccctcccaccaaaacaggctgaattgtctgtcttttcaaacagctcttacactaaaaaaaGGCGTCACCATTTTCagaatttcacagtattattccaacctcacagTGTGGAAATACATGATAAAACACAAAAATCAAcggttttgactgcactgggcctttaaccattggtgggggaaatgcaaaactgacccaataTCAGAATCTAGGGGCAAGAGTTCACCCTCCTCCATTACTGAACACTTCATTAGAGGACAATATAGGAACGACTACCCCGTCATTTAACGCCGACCATTGATAGGTAGCCTAATACCACCAAGATCCAAAAAGTCACAAAAAGCCGTGTAAACGCTCAGTGACGGCTGGTGACAACCATTCTGAAAACAACAGGGCCTAGTAAGTGTTTCGGTCCAGCGTAAAACCATTGTAGTCTGCTTTTTTTCAGGGGAGGGGATAAATATATAGAACTTGTGGCCTAAAAATCCTGTTCTTTAGTCTCCATCTGTAGTCATTGAGAGGCAGAGTGACAAACGGGACTCTGCCTGGAGTTAGCTCCGGTCTGCCCATAGAAACAAAATCTACTCTGAGAATGCCATGGTCTGAGGGGCTTTGCCCATtctagtaattctatttctatgggtcTGCCAACGACAAGAGGGTCTTGTTGACTGATAATCCCACGTCGAGATTGAGATTTACAAAATTAAACACCAcgtaaaaaaactaacaaaaaaacAAGATCACCGAAAAAAAATACTTCTGCGACCATCAGTGCTTCTCTCGCCGTTTCATATACAAGAGTAGAGTATATAAATgtaaaatgagtaaaaaaaataataaaataaagaaatgaGTGCAATGACAAACCGTATATGCCTTTGCCCCTTTGTTTCTCTCCCAAAAGGTTACATGTCTAGCTAGCGATTCAGGAGCTCAGGACCCACTGCGACAGTCCActgtctctcggtctcgctctccCTGTGTCAGTTTAAAACCAGTCGTTTACATTGTCAGTTTGAGTTTGGCTCTGAGAGTCAAGTTAAGTCCTTGGGTAGGCAGTGTTACCACCCCTCGTGCCCATAAAAAGTGGCGCAAAAAATTGAATCTGTAGTGGTTGCTGATAAAACACACAGATGACATGAGGACAGAAAACAAATGAAAAGGCTTTTTGATTGGCAGCGGCCCTTCTCTGCTTCCAGCCTATCAGGGGTTCCAGTAAAGGTGTGGGGGGGCGGCTCTGAGGGGGTTCAGCCAATTAACTGGAGAGGGTTGTTATTGTACATCCTAGATCCAATTCTTAGGTGTAGGCCCTCACCCCCAAACTTCCATCCATCTCAGAACcagccctctcttctccctcttccgcCTTTCTTCCGTTTTACCCGAGTTCCTCATTCTCTTGCTCCGTTCTGCCCAACTTCCTTAGCTGGGCCTAGCCCTGGGCTAGATGAACTTGAAGCACTTAGTCTTGTCGTGGGGCAGACGTGTCTTGAAGAGCACAGAGTCCACGCGGAACTGTGTGTAGAGTAAGGGCATGTAGCCGTACACCTTGACAAAGAAGTTGATGCACTTGTGGCGCTCGTGGAAGTGAGAGTCGTCGTGCGACAGGGCCTGCGGGCAGCCGGGGCAGCGGAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU792474 lncRNA downstream 5254 31086494 ~ 31089094 (-) True G696220
TU792442 lncRNA downstream 58981 31034269 ~ 31035367 (-) True G696189
TU792428 lncRNA downstream 78079 31015946 ~ 31016269 (-) True G696176
TU792373 lncRNA downstream 152254 30941880 ~ 30942094 (-) True G696126
TU792372 lncRNA downstream 152959 30941182 ~ 30941389 (-) True G696125
TU792479 lncRNA upstream 850 31098780 ~ 31100779 (-) True LOC110529227
TU792544 lncRNA upstream 103644 31201574 ~ 31204165 (-) True G696289
TU792549 lncRNA upstream 111073 31209003 ~ 31216605 (-) True LOC110529778
TU792555 lncRNA upstream 122070 31220000 ~ 31224726 (-) True G696298
TU792619 lncRNA upstream 248030 31345960 ~ 31346302 (-) True G696353
trnaa-ugc-25 mRNA downstream 23931 31070343 ~ 31070417 (-) True trnaa-ugc-25
XM_021612296.2 mRNA downstream 42626 31047510 ~ 31051722 (-) True LOC110529775
XM_021612294.2 mRNA downstream 50316 31024376 ~ 31044032 (-) False LOC110529774
XM_021611348.2 mRNA upstream 1596 31099526 ~ 31120500 (-) False LOC110529227
LOC118965648 mRNA upstream 18648 31116578 ~ 31116747 (-) True LOC118965648
XM_021612304.2 mRNA upstream 111073 31209003 ~ 31216765 (-) False LOC110529778
XM_036985285.1 mRNA upstream 194873 31292803 ~ 31298521 (-) True zfp36l1b
XM_021612318.2 mRNA upstream 278662 31376592 ~ 31381078 (-) True cgrrf1
TU792310 other downstream 238941 30855107 ~ 30855407 (-) True G696073
TU792305 other downstream 247139 30846902 ~ 30847209 (-) True G696068
TU790962 other downstream 1032180 30001763 ~ 30062168 (-) False G694858
TU790963 other downstream 1032180 30038588 ~ 30062168 (-) True G694858
TU789639 other downstream 2135516 28958395 ~ 28958832 (-) True G693665
TU792778 other upstream 379424 31477354 ~ 31478027 (-) True G696499
TU792983 other upstream 559796 31657726 ~ 31679735 (-) True LOC110529793
TU793919 other upstream 1116556 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other upstream 1116556 32214486 ~ 32217549 (-) True LOC110529804
TU794118 other upstream 1400869 32498799 ~ 32499410 (-) True G697774

Expression Profile