RNA id: TU792631


Basic Information

Item Value
RNA id TU792631
length 334
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G696365
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 31354199 ~ 31354532 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGAGATTCAGTACATATGGAGCATTAGAGCTAAACCTACAGTAAATAAGACACATCTCTTCCTAACTTCAATGGTCCAGTGAAATTCAcaaacatacatttttcataattttgttttaagccttccccaaaccatagacctaaccttaacctctaaatGTCATTCGGAGAgcggggttctactaagctaacatattttttttttttaaagattgtcATATCATGGATTTTATTTGGAATTTTAGGGCCCCTTTAGGTATCAAAAGCAATTATTTATAGCTCATAGAAAGGCATTGACTAACGAATTTGTAAATGGCAAAAAAACATCTCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU792625 lncRNA downstream 2861 31350742 ~ 31351338 (-) True G696359
TU792624 lncRNA downstream 4335 31349597 ~ 31349864 (-) True G696358
TU792622 lncRNA downstream 5873 31348095 ~ 31348326 (-) True G696356
TU792619 lncRNA downstream 7897 31345960 ~ 31346302 (-) True G696353
TU792555 lncRNA downstream 129473 31220000 ~ 31224726 (-) True G696298
TU792632 lncRNA upstream 298 31354830 ~ 31355104 (-) True G696366
TU792633 lncRNA upstream 5436 31359968 ~ 31360217 (-) True G696367
TU792635 lncRNA upstream 7509 31362041 ~ 31362314 (-) True G696369
TU792645 lncRNA upstream 43208 31397740 ~ 31402556 (-) True G696378
TU792811 lncRNA upstream 195980 31550512 ~ 31551280 (-) True G696531
XM_036985285.1 mRNA downstream 55678 31292803 ~ 31298521 (-) True zfp36l1b
XM_021612304.2 mRNA downstream 137434 31209003 ~ 31216765 (-) False LOC110529778
XM_021611348.2 mRNA downstream 233699 31099526 ~ 31120500 (-) False LOC110529227
LOC118965648 mRNA downstream 237452 31116578 ~ 31116747 (-) True LOC118965648
trnaa-ugc-25 mRNA downstream 283782 31070343 ~ 31070417 (-) True trnaa-ugc-25
XM_021612318.2 mRNA upstream 22060 31376592 ~ 31381078 (-) True cgrrf1
XM_021612321.2 mRNA upstream 73992 31428524 ~ 31431727 (-) True LOC110529787
LOC110529789 mRNA upstream 77860 31432392 ~ 31435370 (-) True LOC110529789
XM_021612322.2 mRNA upstream 98802 31453334 ~ 31458247 (-) True LOC110529790
XM_021612323.2 mRNA upstream 132285 31486817 ~ 31503990 (-) True LOC110529791
TU792310 other downstream 498792 30855107 ~ 30855407 (-) True G696073
TU792305 other downstream 506990 30846902 ~ 30847209 (-) True G696068
TU790962 other downstream 1292031 30001763 ~ 30062168 (-) False G694858
TU790963 other downstream 1292031 30038588 ~ 30062168 (-) True G694858
TU789639 other downstream 2395367 28958395 ~ 28958832 (-) True G693665
TU792778 other upstream 122822 31477354 ~ 31478027 (-) True G696499
TU792983 other upstream 303194 31657726 ~ 31679735 (-) True LOC110529793
TU793919 other upstream 859954 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other upstream 859954 32214486 ~ 32217549 (-) True LOC110529804
TU794118 other upstream 1144267 32498799 ~ 32499410 (-) True G697774

Expression Profile