RNA id: TU793872


Basic Information

Item Value
RNA id TU793872
length 260
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G697541
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32120742 ~ 32121001 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTGTGTATTGTGCTCTCTAGAGTTATTTTAAAATAGATCAACCTTTCCATATGCTAAATAAGCCCATAATGGCTGAGTGGAAGGTTTCAGCCCATGGTTTCTATTGCCCCAGGCGCTCCCCATGGCTCCAGTCCCCATACGCTCCAGCTCAGAATTCATGTTCTAGTCATGGCAACATGGACCCTATCACCATCTGAGGCCATTCCCTAATAGCCTTGGAAGAACAGCCACACATGGACCCAGTAAATAATGCAAACC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU793841 lncRNA downstream 36464 32083938 ~ 32084278 (-) True G697513
TU793839 lncRNA downstream 38280 32082204 ~ 32082462 (-) True G697511
TU793297 lncRNA downstream 214760 31905661 ~ 31905982 (-) True G697011
TU793233 lncRNA downstream 258743 31861783 ~ 31861999 (-) True G696948
TU793217 lncRNA downstream 268886 31851546 ~ 31851856 (-) True G696932
TU793875 lncRNA upstream 4695 32125696 ~ 32125911 (-) True G697544
TU793889 lncRNA upstream 28611 32149612 ~ 32149817 (-) True G697555
TU793895 lncRNA upstream 36996 32157997 ~ 32158219 (-) True G697559
TU793896 lncRNA upstream 37353 32158354 ~ 32158655 (-) True G697560
TU793897 lncRNA upstream 38222 32159223 ~ 32160048 (-) True G697561
XM_021612327.2 mRNA downstream 417217 31657632 ~ 31703525 (-) False LOC110529793
XM_021612326.2 mRNA downstream 440940 31657632 ~ 31679802 (-) False LOC110529793
XM_021612325.2 mRNA downstream 514551 31602683 ~ 31606191 (-) True LOC110529792
XM_021612323.2 mRNA downstream 616752 31486817 ~ 31503990 (-) True LOC110529791
XM_021612322.2 mRNA downstream 662495 31453334 ~ 31458247 (-) True LOC110529790
XM_021612332.2 mRNA upstream 11682 32132683 ~ 32135194 (-) True LOC110529796
XM_021612343.2 mRNA upstream 93450 32214451 ~ 32217570 (-) False LOC110529804
XM_021612342.2 mRNA upstream 93450 32214451 ~ 32217572 (-) False LOC110529804
NM_001160613.2 mRNA upstream 148094 32269095 ~ 32278234 (-) True bpnt1
XM_021612356.2 mRNA upstream 165057 32286058 ~ 32287169 (-) True LOC110529808
TU792983 other downstream 441007 31657726 ~ 31679735 (-) True LOC110529793
TU792778 other downstream 642715 31477354 ~ 31478027 (-) True G696499
TU792310 other downstream 1265335 30855107 ~ 30855407 (-) True G696073
TU792305 other downstream 1273533 30846902 ~ 30847209 (-) True G696068
TU790963 other downstream 2058574 30038588 ~ 30062168 (-) True G694858
TU793919 other upstream 93485 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other upstream 93485 32214486 ~ 32217549 (-) True LOC110529804
TU794118 other upstream 377798 32498799 ~ 32499410 (-) True G697774
TU794745 other upstream 868244 32989245 ~ 32990061 (-) True G698356
TU795919 other upstream 1822021 33943022 ~ 33952356 (-) True G699468

Expression Profile