RNA id: TU793984


Basic Information

Item Value
RNA id TU793984
length 1963
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G697644
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32303157 ~ 32305119 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGTTTGATTCCACCTCCTTTCTGTATTTTTGAGTGTACAGTTTAGACAGACATGAAGCCATTTATTGGAGCCGTTTATTGGTTGAAGCCGTTTATTGGAGATGATACACGGGCATACTGCCTGTATCGTAAGGCTGATTTCTACACCAAACTTAgtgatgtaaaaaaacacaaCTCAAAAACATACTCAAAAGCCAAAGCCTTATAACAGTTCCACCCAAAACAAGCTGCCATTTATGGTTAAAAAAGTTTACTCTCCAAAAAAGGCTGAGGCCACCATGGCATTAGCTATCGCTGAACACTGTTCCATGCTGGCATGTGATCACATTGGAGAAGCATGTAGAGCTGCTTTCTCAGACTCCACTGCTGCTACCCACTTCAAAATGCACACGACAAAGTGCACAGAAATTATTAACGGTGTTCTAGCACCATACTTTCTGAAAAAGATGGTCGCAGATGTGGGTGACCGGTGCTTCAGCCTCCTCCTTGATGAGTCCACGGATGTTAAGTGTTTCTAAgtacctgggggttgtgataaggtactttagtgacaccaagcagacaattgtatcaacatttctggggcttgttgagttggagggaggagatgccAAATCTATAGCCCGTGCTGTTATGGCTTTCCTCGAGAAGTGTTGTCTTAAAAAAGAGAAACTCCTGGGGATAGGGACTGACAATGCCTCTGTTATGATGGGGATTAACAATGGGGTCCATAAGTGCTGAAGGAGGAGTATGGCCTCAAAAATCTGGTTCTTATTCGCTGTGTGTGCCACTCTCTGCAGCTTgctcatttgtagttctaaacatgtttagggtgtttttaactcactttttgtctctcccacgatgttattcctctctcctacagtgtCCATCACAATGACATGCACATGACCCATTATGCAAATTAGGCGAttagccaatagctactttccttactgaggagttggcaacactgcggAGGCCCCCCTCTGGCTCCGGTCTGACCCTgcccctgcctctcctctgctGCAGCACGCTTTCTACCTATTTGGGTCCCCCTCTTTTCTTTAATCCGCGTTGATCCATTACGTCTGTCGCATAAAATGGCCTATGTGTCTTTCCTTCTTTTTGACAGTTGTGTTGTCTGTCTTTTTATTCTCCAGTAACAGTTACGTTACTATAGTCCTCCAGCTCCGACAATAGTTTTTTTTCCGAAGCGGAGAAACGGTTACTTTTTTGAAGTGCCATGATCAGGTGGCTAACGGACAAATCATAAGTGGATAAATAACATTAAGTAGTGACAATAATAAATCATATTTTATGCTATCTAACTTGGTttataaactagctagctacatgagctaacattagctaacgaATTAGTTTTCTGTCTAGTACTGGCAAATAATGgattttatttcaaatcaaacaACCCATGAGAATCTTTCACGATGGAGTTGCAGTAGTTCTAATGTTACATTGTTATTATTTTATCAAGGAACAGCAACTTTCTGGCCTCATTTGTCAAATTGGCTAGCTACTCCGTTTCAACTCACAAAATACCTCTTATATTGGTGTAACATGTCACTAATCATAGTTTAAAACCGGTAATCATAGATTTACTGATCCAGATTTAAAATTAAGTGGTGCGACACATCTTTGATGAATTATAAACATAGATTTACAAAACCTAGATTAGCTCTAATCCTAGATAAATTTAAAACATGTTGGTGCAACCCACCCTTAGATttattcttccactttgacattagtgcgtattttgtgtagatcattgacaaaaacatgacaatgaaatccattttaatcccacttgtaacacaacaaaatgtggaaaaagtcaaggggtgagaatactttctgaaggcactgtagacgtTAAAATGCCTAATGCCTATATAATGCCTATAGGTTTTTTAGGTTGTGAAGGTGGGGACCCCTGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU793983 lncRNA downstream 76 32302870 ~ 32303081 (-) True G697643
TU793982 lncRNA downstream 18028 32284890 ~ 32285129 (-) True G697642
TU793972 lncRNA downstream 34554 32255521 ~ 32268603 (-) True G697632
TU793944 lncRNA downstream 78344 32224607 ~ 32224813 (-) True G697604
TU793897 lncRNA downstream 143109 32159223 ~ 32160048 (-) True G697561
TU793989 lncRNA upstream 19692 32324811 ~ 32325062 (-) True G697649
TU793991 lncRNA upstream 23699 32328818 ~ 32330202 (-) True G697651
TU794012 lncRNA upstream 59366 32364485 ~ 32364689 (-) True G697671
TU794013 lncRNA upstream 59801 32364920 ~ 32365217 (-) True G697672
TU794024 lncRNA upstream 79234 32384353 ~ 32384604 (-) True G697683
XM_021612349.2 mRNA downstream 1864 32289064 ~ 32301293 (-) False LOC110529806
XM_036985293.1 mRNA downstream 1864 32289064 ~ 32301293 (-) True LOC110529806
XM_036985294.1 mRNA downstream 2576 32289064 ~ 32300581 (-) False LOC110529806
XM_021612345.2 mRNA downstream 2578 32289064 ~ 32300579 (-) False LOC110529806
XM_021612352.2 mRNA downstream 2586 32289064 ~ 32300571 (-) False LOC110529806
XR_005052856.1 mRNA upstream 1023 32306142 ~ 32322140 (-) False LOC110529812
XR_005052857.1 mRNA upstream 1023 32306142 ~ 32322140 (-) False LOC110529812
XM_036985297.1 mRNA upstream 13321 32318440 ~ 32322140 (-) True LOC110529812
XR_005053020.1 mRNA upstream 112353 32417472 ~ 32421085 (-) True LOC118965610
XM_021614360.2 mRNA upstream 258012 32563131 ~ 32569877 (-) True LOC110531086
TU793919 other downstream 85608 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other downstream 85608 32214486 ~ 32217549 (-) True LOC110529804
TU792983 other downstream 623422 31657726 ~ 31679735 (-) True LOC110529793
TU792778 other downstream 825130 31477354 ~ 31478027 (-) True G696499
TU792310 other downstream 1447750 30855107 ~ 30855407 (-) True G696073
TU794118 other upstream 193680 32498799 ~ 32499410 (-) True G697774
TU794745 other upstream 684126 32989245 ~ 32990061 (-) True G698356
TU795919 other upstream 1637903 33943022 ~ 33952356 (-) True G699468
TU795985 other upstream 1718172 34023291 ~ 34023885 (-) True ankef1a
TU798118 other upstream 3277879 35582998 ~ 35589877 (-) True G701454

Expression Profile