RNA id: TU794118


Basic Information

Item Value
RNA id TU794118
length 612
RNA type TUCP
GC content 0.56
exon number 1
gene id G697774
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32498799 ~ 32499410 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATGATATACTTCTCTGTGTGAACGGTTTTTAATGATGTGCATGTGTGCGCGTATGTTTGCGTGTGTCTTTGTCTAACATCAGCTGTCATGGGGAGTGGAGACAGTGACTAGCGGTGTGTTAGTGCGCATCACTGCAGGCACAATGTGCTGTTGTGAGAAAGGATTCACGTCCTGTGTGTGTATCTaagcataatgtgtgtgtgtatgagcataTGTGTGTATGAATGAACTTGTCTTGCCTGAATCCCTATGGAAGAGCGTGGTGTTTTGAGGTATTCCTCAGCCTTGGACACGAGCACTGCCTTGTCACACGTCTGCACAGAGCTGTGGCTGCCCATGGAGGCGTGCCGCTTGCCCGCCGCCGTCTCCATGGCCAACGTCACCGCCTTGGCACTGTCCAGGCTGTCGGTGGAGTTGTAGAGGTTTCGACCCGAGCCGCCCAGACCGTCCGGCGCCCACAGGATACTCCCCCGCGGGTGCCTTCCCTCGTGGTAGGCATCCTGGGTGGAATCTGTGCTGCTCTGGGCTGTCACCGAGATGAGGGGCTTGGAGGTGGCGCGAGGTGGCACCGGCGGGGGCGTCTTTGCCTTATAGCTAGGCGTGTGTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU794117 lncRNA downstream 829 32497732 ~ 32497970 (-) True G697773
TU794108 lncRNA downstream 13444 32483825 ~ 32485355 (-) True G697764
TU794106 lncRNA downstream 17544 32480686 ~ 32481255 (-) True G697762
TU794104 lncRNA downstream 19492 32479001 ~ 32479307 (-) True G697760
TU794102 lncRNA downstream 21047 32477480 ~ 32477752 (-) True G697758
TU794124 lncRNA upstream 9681 32509091 ~ 32509306 (-) True G697780
TU794125 lncRNA upstream 12195 32511605 ~ 32518649 (-) False G697781
TU794126 lncRNA upstream 14723 32514133 ~ 32518649 (-) False G697781
TU794127 lncRNA upstream 14723 32514133 ~ 32518728 (-) False G697781
TU794129 lncRNA upstream 14723 32514133 ~ 32518774 (-) True G697781
XR_005053020.1 mRNA downstream 77714 32417472 ~ 32421085 (-) True LOC118965610
XR_005052856.1 mRNA downstream 176659 32306142 ~ 32322140 (-) False LOC110529812
XR_005052857.1 mRNA downstream 176659 32306142 ~ 32322140 (-) False LOC110529812
XM_036985297.1 mRNA downstream 176659 32318440 ~ 32322140 (-) True LOC110529812
XM_021612349.2 mRNA downstream 197506 32289064 ~ 32301293 (-) False LOC110529806
XM_021614360.2 mRNA upstream 63721 32563131 ~ 32569877 (-) True LOC110531086
XM_036985337.1 mRNA upstream 70606 32570016 ~ 32589797 (-) False cep43
XM_036985335.1 mRNA upstream 70606 32570016 ~ 32589808 (-) False cep43
XM_036985336.1 mRNA upstream 70606 32570016 ~ 32589809 (-) False cep43
XM_036985332.1 mRNA upstream 70606 32570016 ~ 32589810 (-) False cep43
TU793919 other downstream 281250 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other downstream 281250 32214486 ~ 32217549 (-) True LOC110529804
TU792983 other downstream 819064 31657726 ~ 31679735 (-) True LOC110529793
TU792778 other downstream 1020772 31477354 ~ 31478027 (-) True G696499
TU792310 other downstream 1643392 30855107 ~ 30855407 (-) True G696073
TU794745 other upstream 489835 32989245 ~ 32990061 (-) True G698356
TU795919 other upstream 1443612 33943022 ~ 33952356 (-) True G699468
TU795985 other upstream 1523881 34023291 ~ 34023885 (-) True ankef1a
TU798118 other upstream 3083588 35582998 ~ 35589877 (-) True G701454
TU798044 other upstream 3141945 35641355 ~ 35687636 (-) False LOC110529865

Expression Profile