RNA id: TU794129


Basic Information

Item Value
RNA id TU794129
length 4642
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id G697781
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32511605 ~ 32518774 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTCTTCCAAAAATGTTTATTTGCAGAACTATTTACAAAAGATGGTCATTAGCAATACTTAATTCAAAGAGTCATAATAAGTTATAGCATAAAAATACTGAAGCACATTGATAACGCAggaaaataatcaaatcaaatcaagagttcAAAAACTCTTATTTAGAAAAGAAAGGTTAACAATCATTTCAGATAATCAAATATATCATTTAAATTGAAATAGTAACTTAAACAGCAAATTAGTCAAATACAAAACAATCTGTAGAATGCTGCAATACTGAACAGCAATGAAAGATCAGATaatacattcatacatacattTCACTATCATGCATGCTGTCTTAAGTCCTTGTAAAAAAACCCAGACAAAGGAAAGttcaaacaacaaaaaacatggtCGACTCAAGAGCGGAAAATAGTTTAAATTAGGCAtgaatttatatatttatatatgtatatttctGTACAAATAATGAATATTTGGCATTATATTCATCCTTATTATTGATGTGATATCTAACAATTCAAAATAGTTTAAGCTAAACATCTACCTTTATCCAATCAGACTCTTTCTTCCATGTTACATTCCAAAACCCATGAGAGGGCATTTATTAAATATACCCACAAAACAATAAATTCTTCACCATAGGTAAACATACAGTGAAAGCTATCTCCCCTCGCAAAACATTtagcaaaaataaaaaattgcaCAGGTAAATGGCGCCCTTTCTTTTCCCTGGGAAAGTTGTATTGGCTTTTAAAGGCTAAAAACACAACGACTGTCAATGTGAACAATGAATGCACATCTGCCCCGAATGTCcatatagttgagttacagtgccttcagaaagtattcagaccccttcactttttccacattttgttaacgttacagccttattctaaaatggtttaaataaaAACAAGCCGTAGTAATGtaaacataataccccataattacaaagcgaaaacagactTTTTGAAATTTaggaaaatgtatatatataaaaaaactgaaataccttaacataagtattcagaccctttgctatgagattcaaaattgagctcagttgcatcctgtttccatttatcattcttgagatgtttctacaacttgattggagtccacctgtggtaaattcaattgatatgacatgatttggaaaggcacataactgtctacataaggtcccacagttgacagtgcatgtcaaagcaaaaaccaagccatgaggtcgaaggaattgtctgaagagctccaagacaggattgtgtcgaagcacagatctggggaaggataccaaaacatttctgcagcattgaaggtccccaagaacacagtggcctccatcactcttaaatggaagaagtttggaaccaccaagactcttcctagagctggccactctgccaaactgagaaattggggagaagggttttggtcagggaggtgaccaaaaacccgatggtcactctgacagagctccagagttcctttgcaGAGATGGGAGACCTTCCAAAAGTACAACAAtcgctgcagcactccaccaaatattatggtagagtgaccagacggaagccatttgtcagtaaaaggcaaatgacagcccgcttgggagttttccaaaaggcacctaaaggagtctcagaccatgagaaacaagattctctggtctgatgaaaccaagattgaactctttggcctgaatgccaagcgtcacatctggaggaaacctggcaacatccctacggtgaagcaaggtggtggcagcatcatgctgtggggatgtttttcagcagcagggactgggagactagtcagaatcgaggcaaagatgaacggatcaaagtacagagagatccttgatgaaaacctgctctagagcgctcaggacctcagactggggcgaaggttcaccttccaacaggacaaagaccctaagcacacagccaagacaaagcaggagtggcttctgaacAAGTCTAAAAAAAATTGgaaaacctgtttttcctttgtcattatggggtattgtgtgtagattgatgagtggaaaaaactatttaatacattttagaataaggctgtaatgtaacaaaatgtggaaaaagtcaaggggtctgaatactttccaaaggcactgtacatgtaggcCTAGGTAATAGCAGGGGAATGGGAGACCTTGTAGGCAGAACCCTCCATTGGCATTGACTAAGGAATAAAGTGTTTGGGTGGCAGGTCAAATTAGAAGGCCATACTGTAGATGTTGTGATGTGATGTATGGCCACAATGCATTGAATGAAGCTTATTGCTAAACGGGCAGTGGTCACATTCAGTCCATGTGGTTTTCAATGTAAAGCAGCTCTGACTCGCTCAAaccttttaaaataaaataaaataacattgccTCAAGGAAATTAAGAAAGAGCCCATGGTATTTTGTGGAAGGTCAGTGGCCAAAATCAGTGATAATGATAAGAACAACACTGTGCTCCTTATTGAATCAAATATtttatgaggagagagagagacattcttaGAGTGAAACTGCACTGGAAAAAAGGAAAAAATTGAAAGAAAAACTCAAGCAAAGTTTACAGGGCCATAGAAAATCGTGTTGGTGTCAAAATACCTCAAGACGAATTGTTCAAAATAAAGAATTTAGGGTGCCATCTTGAGGACATTTTGTCTTActgctgtgtagtgtgtgtgtgcgcgtacctGTGTTTGTGCGCTGATTGTCAGAATAAACCAATCTCTGTAATTCTTGAGAaagaaaacaagaaaaaacaAGTTCAATTAACTTCAGCACCTTTACTGACTTCTTTGAGGTTTATAGCACAACAGCCCACCAAACACATGTGCCCAAGACGATGTAGCAAAAATGTCACTCATGGAACATTGTACGTTTTAGCCCCTAAAAGAGTTCCACACGTAAAAGGGCTGCAGAACAAAATATCACACCAAAGAACTTTGATATGATGCAATTTGTTATTCTAAATGTCTGTTTATACGTGTGTTTAGCGTTTAAGTCTGATGATTTCCAATCATTAAAATGCAATCAGGAAAGCAATTCATCATGGACATACTGCATATTAGATGAGGGTGATGTACTGTGGGTTCAATAGAATATCAAGCTGCTTTCAGAATGACCCATCAAGATGGCCAGTAAGTGTGCAAACACAGACGTTTCTGAAGATAGATCAAGATGACTGAAAACGTACTGAGATCTGAACTGTGCACAACAATTCAATTCTTCAACCTTCTGAAGACAATGTCCACTTCCATAAAGATCAGCAAACAAAGATTCATTTCCACTGGGGCCATCGTGCGTTAGAGGGAATGTCTGTAGAAATGGGGACATGGTGCAGGCTGGCAGGACTACTGCATAGGACACAGGCGTGTGGTGGCCGTGTGTTGTCACTGTAACTGACTCTCAAACATTGAGGTAAATAGCTGTATGTGTGCCTGCCTGTTGTATGAAACACTATTGCACTTTTTAGCAGGTCAAGTTTAGTCAGTCTCTAGTTTGTGGTAACGATAATAAGCCATAAAGCATTGAGAACTGGGACGAGGTTACGATATCATAGCAAGGAAAAATACTCCCTGGGATGTTGTTTTTCTCTGCCATCCCCCTccgagccacacacacactcgcacacacacacacacacacacacacacgcagggcacacacaaatgcaaacacacgtacacacataacCTATGTTCGCTCCTGTTGCATTGATTCAGTTTGATTCGGATGAAAAATGTCTACGCTGCACTTTCTGTTGGTCAAAATAAATCAAAGACCATCAACATACAAGATTTCATGATGATAAAAAATGTACAGTGTGTACCAATCACGAAGACACTTGCATACCGGTGACATAACGTAAACTTGGGGCATGTACCAATAAATATGAATCACCAAACCTGTGGATTACACCAAAGGTAACATGTCCCAAACCCCCCCCCATGATTAATGGGAACAATCTCTACCTGTGAGAATGAATGGATGCCAACAATGACAGATCTTACCAAAAGCATAGTTTAAACACAAATCACACAAAATGTATCAATTCAATTTTCACATCATCTCATCCTCTTCAATTATCAACTTGTGCTGCAGTCATACAACAGTATAACAATTCAAAATGATCCAATGCTAATCCAAACTACTAATATGAAGGCATTTGgatgaaaacaaaaacaagctAGCTTTCCTCCCAAACAGCCCTTTGAGGTGACATTGCAACTCAATCAACACATCCAGAGATGGCCAAGCACTCTGCATGGCATCGTATTCCAACCAAAGACCTCAAACATTCATTCATAGATTCTTGTAAGTCTGATTTTAAGGCACCTAAGGATATTTTCCCCCATCGTACGTAGTTTCCAAACTTGCAAACCCTCCTTAGATCATGGGAAGGTATACGGTATGGGACAAACATGATAATAGAGTATGTTTGAGATTGGAGAAAGGGCAATTCACTTTCTACGAAGACAAAAAAAATTGCTGTCTCAATTTATGCACCTAATGTAGAGGGCCATACATTATAATATCACACAATATGAATAACTAAAGACTAGGAAACGATAAAGGGGAAAGAAGAACGTGAAGATCCATGAACTATTTGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU794124 lncRNA downstream 4827 32509091 ~ 32509306 (-) True G697780
TU794117 lncRNA downstream 16163 32497732 ~ 32497970 (-) True G697773
TU794108 lncRNA downstream 28778 32483825 ~ 32485355 (-) True G697764
TU794106 lncRNA downstream 32878 32480686 ~ 32481255 (-) True G697762
TU794104 lncRNA downstream 34826 32479001 ~ 32479307 (-) True G697760
TU794152 lncRNA upstream 10858 32529632 ~ 32529990 (-) True G697803
TU794156 lncRNA upstream 12839 32531613 ~ 32531839 (-) True G697807
TU794342 lncRNA upstream 62984 32581758 ~ 32582960 (-) False G697966
TU794343 lncRNA upstream 62984 32581758 ~ 32582792 (-) True G697966
TU794369 lncRNA upstream 146174 32664948 ~ 32665251 (-) True G697992
XR_005053020.1 mRNA downstream 93048 32417472 ~ 32421085 (-) True LOC118965610
XR_005052856.1 mRNA downstream 191993 32306142 ~ 32322140 (-) False LOC110529812
XR_005052857.1 mRNA downstream 191993 32306142 ~ 32322140 (-) False LOC110529812
XM_036985297.1 mRNA downstream 191993 32318440 ~ 32322140 (-) True LOC110529812
XM_036985293.1 mRNA downstream 212840 32289064 ~ 32301293 (-) True LOC110529806
XM_021614360.2 mRNA upstream 44357 32563131 ~ 32569877 (-) True LOC110531086
XM_036985337.1 mRNA upstream 51242 32570016 ~ 32589797 (-) False cep43
XM_036985335.1 mRNA upstream 51242 32570016 ~ 32589808 (-) False cep43
XM_036985336.1 mRNA upstream 51242 32570016 ~ 32589809 (-) False cep43
XM_036985332.1 mRNA upstream 51242 32570016 ~ 32589810 (-) False cep43
TU794118 other downstream 14723 32498799 ~ 32499410 (-) True G697774
TU793919 other downstream 296584 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other downstream 296584 32214486 ~ 32217549 (-) True LOC110529804
TU792983 other downstream 834398 31657726 ~ 31679735 (-) True LOC110529793
TU792778 other downstream 1036106 31477354 ~ 31478027 (-) True G696499
TU794745 other upstream 470471 32989245 ~ 32990061 (-) True G698356
TU795919 other upstream 1424248 33943022 ~ 33952356 (-) True G699468
TU795985 other upstream 1504517 34023291 ~ 34023885 (-) True ankef1a
TU798118 other upstream 3064224 35582998 ~ 35589877 (-) True G701454
TU798044 other upstream 3122581 35641355 ~ 35687636 (-) False LOC110529865

Expression Profile