RNA id: TU794326


Basic Information

Item Value
RNA id TU794326
length 2698
lncRNA type read_through
GC content 0.42
exon number 2
gene id G697956
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32684787 ~ 32687854 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCCGTGTTTATATAGTGACGGCAGGGCTAGGTGAATAGATCATGGAAGACTTAAGGTGAAAAACCTTAGTGAATAAAGATGCTCAAACAAGCAACTGCATCAGTATTGGGCGTTCCAACTCTAAAATGCACGACTTAAAACAAAAACCGGGAAATGCATGTGGTCTAAATAGTGACATTGGGGCTAATTCAAACTGCAGTCGGATGTTCTCACAGGTGAGCGATTCAGCCCATGCTTGGTGAATAGCACTTGGTTTATCTCTGGGAGCAGGACACATAAACAAGATTATGCGCGACAAAAGTGagaatgaataaataaatcacaGCAAAGGAATGTAGTCTGTAAACTAGAAAATTAAACACGCTGCAAACATCCTACTCCCATTGATAGGATTAAAGTGGCATTCGCCAGTATGAATGACATTTGTGGGTCCTGCCTTTGACTATTAGATTTACACTTGTCCTATACATGTTTGTAGCCTTAATTTGCTTAGAATAACCTTAAACGCTAAATCTCTCCTAGTCCCAGAATGACTAGATAGCTCACATCTgttcatgctagctagcaacagatCCTGTTGCAACTACAGTAGCTAGCCACATTAAAAGGTTGCCGTGTTCAGCTGTCATTTCACAGCTTGGAATGATGGTATCACATATTacaaataaataccttatttgaTAGCATTTTGTCAGATGGAGATCCCTCTCGCTGTCACCAGCTTTCTACTTACTACCTAAAATGCACATGTGATTGGTGTTCAGAGATTCTACACAATTTGATTGGTTCAGTTTAAAACTTGGCAGCAATTACCTGTCCTGCTAGCGAACATAAGTATTTTGAAGAAATGTGCAAGAGTTGACATTGCCAAATGGAAATGTGTTGAGCAGAAATACACTATGTAAAAACCAGCTCCTCCCTCGACAGCGATCTTTCTCACCAACTAAAGCAAATGGCTTGAGCCCACCACCAGAATACATTGACAAATTGACTAATCTATTTCATTCTGCATCAGTGAATGTGCAAAAACACATTGTGAATACTACCATTTCATGGAGGTACAAAAGCAAGTCTGAACAAACCCTCTTAGCAGTTGTTAGATGTCAATTATCAAAGCTGCACAAAGTGTAGTTATGAGGTAACATTCCTACTGTTTTGGATATGAAGTTATTTCTGTCTGAAAGGCCATCAGCCTTGAACATGTATGGACTAGCATGactaacccccccacccccagagaACAGAGTTAACAgtaaacacatttattttgtcaTCTGCACTTTACAGTTGGAATTCGGGGAACTCAAAAACAACATCTTTGCCTGTAAGCTTCTTGTAGACGCCAGAGAAGGTCTCACTTTGTGTTCAACGTTGTTCTGCTGAGCCTTGTCAAGGTGGACCTTGATGAGCCGACTGCTGTCCAGTTTCACGCGGATCCTCTTGCCAACAATTTCACTGGGGAAGACCAGGTCTTCAAGTATGGCATCATGCACAGCTGTCAGAGTACGGCTGGAGAAATAAATCAATTTGCATTAGACATAtggcaaataaaaaaaaatgcaatccTTATAAAAACAATTCTCCTACCACCTGCCTCATTCAAAATTACAGATTCTTTATACGTCTGAACGCATGTATTGGAAAGAGAAAGTAAATCTAAACGCTATGCAGATGTCTCAATCACATCACTGGAGACAAGCAGAGTCTGCTTTAGATAACGCAAGGTAATAAGAGTGAACGTTGATTTTGCATCATACGGTTAGTCTCCGGGTCATCTTGTAACCGTATCGATTTATTCAAAATCCCATTCGAAGTTTCAAGTTGTCACATTCTGAAGTAGAGAAGCGCCTTTCTCgcgagctctttcccaacaacgcAATAACAAATATCAGTATTACAAATAAAGATCAAAAACACACGAGAAAATACAAGCTATATACTGGGTACGTTTCagggtcagtgccaataccatatttacaatgtgcaggttTACTGGAGTGGTAGAAACCATATACAACATGTTAGTAAAATTGTACACTGCATGGTTTAGCCCCCCAGTCATGGCCCAAAGGGCTCTGGGAAGATGTAGGAATATACAGAACACCGTCCTCACCAGCCCGAGGGCCGGGGACAAAGCTTGCTCTCCAACGTCGTGGAACGGGACTGTACGTCACAGCACTGTGAAGCGCTACGCTCCCATACGCCACAAGGACAGAGCCATGTGAGAGCAACCTCACAGGATGTCCACGTTGGGTCCAAAATTGGCGAGCAATTATGGCAGCACCAAATATGACAGAAACAATTTGAAGTTTAAAACTAGTACCCATTCCCACCAACTTTAAAGCCATTTAATTGTCTCTTCCAAACAGTATGTAGTCGTGCACATGCAGGTATGATAATGTAACTCACCTCCTGGGACGCTTCTGCTTATTCTTGATACGGCTTTTCCTGGTTGGTTTGGGCAGGATTCTCCTCTGCAAGTTTAATGAAAATATTAAGGATTACTAATTTACATAGGCAGACTTTAAAAGCCCAAGAAGCATACTTGATAACTAATGTACACTGCATGGTTTAGCCCCCCAGTCACGGCCCAAAGGGCTCTGGGAAGATGTAGGAATATACAGAACACCGCCCTCACCAGCCCAAGGGCCGGGGACAAAGCTTGCTCTCCAACGTCGTGGAACGGGACTGTACGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU794370 lncRNA downstream 18941 32665619 ~ 32665846 (-) True G697993
TU794369 lncRNA downstream 19536 32664948 ~ 32665251 (-) True G697992
TU794342 lncRNA downstream 101827 32581758 ~ 32582960 (-) False G697966
TU794343 lncRNA downstream 101995 32581758 ~ 32582792 (-) True G697966
TU794156 lncRNA downstream 152948 32531613 ~ 32531839 (-) True G697807
TU794379 lncRNA upstream 4108 32691962 ~ 32692607 (-) True G698000
TU794458 lncRNA upstream 101155 32789009 ~ 32789408 (-) True G698076
TU794463 lncRNA upstream 102633 32790487 ~ 32790714 (-) True G698081
TU794484 lncRNA upstream 117569 32805423 ~ 32805629 (-) True G698102
TU794612 lncRNA upstream 176513 32864367 ~ 32864740 (-) True G698226
XM_021612375.2 mRNA downstream 2261 32670745 ~ 32682526 (-) True LOC110529818
XM_021612374.2 mRNA downstream 2338 32670745 ~ 32682449 (-) False LOC110529818
XM_036985300.1 mRNA downstream 45938 32590298 ~ 32638849 (-) True myt1la
XM_036985305.1 mRNA downstream 46536 32590298 ~ 32638251 (-) False myt1la
XM_036985307.1 mRNA downstream 46536 32590298 ~ 32638251 (-) False myt1la
XM_021612379.2 mRNA upstream 289942 32977796 ~ 32986672 (-) False LOC110529821
XM_021612380.2 mRNA upstream 289942 32977796 ~ 33011990 (-) False LOC110529821
LOC110529232 mRNA upstream 703123 33390977 ~ 33405852 (-) True LOC110529232
XR_005052863.1 mRNA upstream 721949 33409803 ~ 33410951 (-) False LOC110529824
XR_005052861.1 mRNA upstream 721949 33409803 ~ 33411406 (-) False LOC110529824
TU794118 other downstream 185377 32498799 ~ 32499410 (-) True G697774
TU793919 other downstream 467238 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other downstream 467238 32214486 ~ 32217549 (-) True LOC110529804
TU792983 other downstream 1005052 31657726 ~ 31679735 (-) True LOC110529793
TU792778 other downstream 1206760 31477354 ~ 31478027 (-) True G696499
TU794745 other upstream 301391 32989245 ~ 32990061 (-) True G698356
TU795919 other upstream 1255168 33943022 ~ 33952356 (-) True G699468
TU795985 other upstream 1335437 34023291 ~ 34023885 (-) True ankef1a
TU798118 other upstream 2895144 35582998 ~ 35589877 (-) True G701454
TU798044 other upstream 2953501 35641355 ~ 35687636 (-) False LOC110529865

Expression Profile