RNA id: TU795130


Basic Information

Item Value
RNA id TU795130
length 279
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G698729
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 33266871 ~ 33267149 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acgccatcacacctccttctccttgtttcacggtgggaaccacacatgcagggatcatttgttcacctactctgcgtctcacaaagacacggcggttggaaccaaaaatcggaTTAAATCAgacgaaaggacagatttccaccagtctaatgtccattgctcgtgtttcttgatccaagcaagtctcttcttctcattggcatcctttagtagtggtttctttgcagcaattcgaccatgaattgctgattcactcagtctcctttgaacagttgatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU795062 lncRNA downstream 51902 33214729 ~ 33214969 (-) True G698663
TU794866 lncRNA downstream 178263 33088396 ~ 33088608 (-) True G698474
TU794762 lncRNA downstream 260226 33006416 ~ 33006645 (-) True G698373
TU794757 lncRNA downstream 262812 33003842 ~ 33004059 (-) True G698368
TU794741 lncRNA downstream 287103 32977804 ~ 32979768 (-) True LOC110529821
TU795143 lncRNA upstream 7516 33274665 ~ 33274952 (-) True G698742
TU795399 lncRNA upstream 142664 33409813 ~ 33411431 (-) False LOC110529824
TU795400 lncRNA upstream 142664 33409813 ~ 33411431 (-) True LOC110529824
TU795397 lncRNA upstream 154287 33421436 ~ 33424015 (-) True G698986
TU795509 lncRNA upstream 319270 33586419 ~ 33586673 (-) True G699093
XM_021612380.2 mRNA downstream 254881 32977796 ~ 33011990 (-) False LOC110529821
XM_021612379.2 mRNA downstream 280199 32977796 ~ 32986672 (-) False LOC110529821
XM_021612375.2 mRNA downstream 584345 32670745 ~ 32682526 (-) True LOC110529818
XM_021612374.2 mRNA downstream 584422 32670745 ~ 32682449 (-) False LOC110529818
XM_036985300.1 mRNA downstream 628022 32590298 ~ 32638849 (-) True myt1la
LOC110529232 mRNA upstream 123828 33390977 ~ 33405852 (-) True LOC110529232
XR_005052863.1 mRNA upstream 142654 33409803 ~ 33410951 (-) False LOC110529824
XR_005052861.1 mRNA upstream 142654 33409803 ~ 33411406 (-) False LOC110529824
XR_005052860.1 mRNA upstream 142654 33409803 ~ 33411530 (-) False LOC110529824
XR_005052862.1 mRNA upstream 142654 33409803 ~ 33413009 (-) False LOC110529824
TU794745 other downstream 276810 32989245 ~ 32990061 (-) True G698356
TU794118 other downstream 767461 32498799 ~ 32499410 (-) True G697774
TU793919 other downstream 1049322 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other downstream 1049322 32214486 ~ 32217549 (-) True LOC110529804
TU792983 other downstream 1587136 31657726 ~ 31679735 (-) True LOC110529793
TU795919 other upstream 675873 33943022 ~ 33952356 (-) True G699468
TU795985 other upstream 756142 34023291 ~ 34023885 (-) True ankef1a
TU798118 other upstream 2315849 35582998 ~ 35589877 (-) True G701454
TU798044 other upstream 2374206 35641355 ~ 35687636 (-) False LOC110529865
TU798045 other upstream 2374206 35641355 ~ 35687465 (-) False LOC110529865

Expression Profile