RNA id: TU795766



Basic Information


Item Value
RNA id TU795766
length 276
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G699324
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 33647708 ~ 33647983 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cagccactcaatgttagtggtggctgtttaaaagtctgatggccttgagatagaagctgtttttcagtctgtcggtccctgctttgatgcacctgtactgacctcaccttctggatgatagcggggtgaacaggcagtggctcgggtggttgttgtccttgatgatctttttggccttcctgtgacatcgggtggtgtaggtgtcctggagggcaggttgtTTGCCCCATGTGATGTGTTGtccagacctcactaccctctggagagccttacggt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU795765 lncRNA downstream 63 33647436 ~ 33647645 (-) True G699323
TU795747 lncRNA downstream 21139 33626239 ~ 33626569 (-) True G699311
TU795744 lncRNA downstream 25595 33621678 ~ 33622113 (-) True G699309
TU795509 lncRNA downstream 61035 33586419 ~ 33586673 (-) True G699093
TU795397 lncRNA downstream 223693 33421436 ~ 33424015 (-) True G698986
TU795768 lncRNA upstream 1620 33649603 ~ 33649829 (-) True G699326
TU795760 lncRNA upstream 32758 33680741 ~ 33683970 (-) True G699319
TU795827 lncRNA upstream 109791 33757774 ~ 33788417 (-) True G699381
TU795875 lncRNA upstream 176090 33824073 ~ 33824422 (-) True G699427
TU795877 lncRNA upstream 178436 33826419 ~ 33826658 (-) True G699429
XM_021612387.2 mRNA downstream 98400 33484801 ~ 33549308 (-) True LOC110529828
XM_021612386.2 mRNA downstream 189236 33454287 ~ 33458472 (-) True LOC110529827
XM_021612383.2 mRNA downstream 211831 33426517 ~ 33435877 (-) True ints9
XR_005052862.1 mRNA downstream 234699 33409803 ~ 33413009 (-) False LOC110529824
XM_021612410.2 mRNA upstream 37386 33685369 ~ 33689052 (-) True LOC110529832
XM_036985352.1 mRNA upstream 71391 33719374 ~ 33822238 (-) False cdc42bpab
XM_036985353.1 mRNA upstream 71391 33719374 ~ 33822238 (-) False cdc42bpab
XM_036985354.1 mRNA upstream 71391 33719374 ~ 33822238 (-) False cdc42bpab
XM_036985355.1 mRNA upstream 71391 33719374 ~ 33822238 (-) False cdc42bpab
TU794745 other downstream 657647 32989245 ~ 32990061 (-) True G698356
TU794118 other downstream 1148298 32498799 ~ 32499410 (-) True G697774
TU793919 other downstream 1430159 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other downstream 1430159 32214486 ~ 32217549 (-) True LOC110529804
TU792983 other downstream 1967973 31657726 ~ 31679735 (-) True LOC110529793
TU795919 other upstream 295039 33943022 ~ 33952356 (-) True G699468
TU795985 other upstream 375308 34023291 ~ 34023885 (-) True ankef1a
TU798118 other upstream 1935015 35582998 ~ 35589877 (-) True G701454
TU798044 other upstream 1993372 35641355 ~ 35687636 (-) False LOC110529865
TU798045 other upstream 1993372 35641355 ~ 35687465 (-) False LOC110529865

Expression Profile