RNA id: TU795879



Basic Information


Item Value
RNA id TU795879
length 555
lncRNA type antisense_over
GC content 0.48
exon number 1
gene id G699431
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 33828124 ~ 33828678 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTTGACAGTTTCCTCTGAGTGGTACAGTATACCATTCATACAAAGGCAAACTTATGAATGAATTATTTACAAAATATAATAAAGTGCTTGGTTAGTTTATCTCAAGAGATCTGCCGTGCTCCTTCTTATTATAGCCTGCAACTCTCCCTGAGAATTCCCATTTTAAATAGAAAAGTACTGTAAGTCCATTTGGAGGCGTCCTGCCCTGCCCAGTCCCAAACACTTAACTTCAAACTATGGAGATGTTGTCCATGGTGCAGGCACATGACTCCACGATCATGTTGGGGAACTCAGCCACTTCTATCTCGGTGTAGTCGCCCTTCTTGACCAGGTACATAATGGGCAGCGGAGCGCTCTCTGCGATGCTACACTTCCTCTCCCCGTAGCCATAGTTGCGCTTGGGCTGCTTGCATCCCCCGGCGCATCTATAGGCCTGGTATCCCGCTGGCTCGATGATCCAGTACTGGGTCCACGTGAGCGCGCGGAAATTGATGAAGTATTTATCTCTGCAGCACGTGTCCTTATCTGGGTTGTTTTCACAGTCGCCTCGAGACC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU795878 lncRNA downstream 129 33827760 ~ 33827995 (-) True G699430
TU795877 lncRNA downstream 1466 33826419 ~ 33826658 (-) True G699429
TU795875 lncRNA downstream 3702 33824073 ~ 33824422 (-) True G699427
TU795827 lncRNA downstream 39707 33757774 ~ 33788417 (-) True G699381
TU795760 lncRNA downstream 144154 33680741 ~ 33683970 (-) True G699319
TU795884 lncRNA upstream 21957 33850635 ~ 33850889 (-) True G699436
TU795892 lncRNA upstream 32587 33861265 ~ 33861485 (-) True G699443
TU795894 lncRNA upstream 39065 33867743 ~ 33868222 (-) True G699445
TU795899 lncRNA upstream 42977 33871655 ~ 33871859 (-) True G699450
TU795900 lncRNA upstream 43224 33871902 ~ 33872117 (-) True G699451
XM_036985355.1 mRNA downstream 5886 33719374 ~ 33822238 (-) False cdc42bpab
XM_021612425.2 mRNA upstream 2994 33831672 ~ 33841602 (-) True LOC110529836
XM_036985370.1 mRNA upstream 146810 33975488 ~ 34009371 (-) False LOC110529840
XM_036985371.1 mRNA upstream 146810 33975488 ~ 34009377 (-) True LOC110529840
XM_036985372.1 mRNA upstream 188332 34017010 ~ 34029131 (-) False ankef1a
XM_021612441.2 mRNA upstream 307880 34136558 ~ 34157637 (-) True LOC110529846
TU794745 other downstream 838063 32989245 ~ 32990061 (-) True G698356
TU794118 other downstream 1328714 32498799 ~ 32499410 (-) True G697774
TU793919 other downstream 1610575 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other downstream 1610575 32214486 ~ 32217549 (-) True LOC110529804
TU792983 other downstream 2148389 31657726 ~ 31679735 (-) True LOC110529793
TU795919 other upstream 114344 33943022 ~ 33952356 (-) True G699468
TU795985 other upstream 194613 34023291 ~ 34023885 (-) True ankef1a
TU798118 other upstream 1754320 35582998 ~ 35589877 (-) True G701454
TU798044 other upstream 1812677 35641355 ~ 35687636 (-) False LOC110529865
TU798045 other upstream 1812677 35641355 ~ 35687465 (-) False LOC110529865

Expression Profile