RNA id: TU795884



Basic Information


Item Value
RNA id TU795884
length 255
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G699436
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 33850635 ~ 33850889 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATTCGGTTCCCTGCTGTgggacatctctccttctctcttcgaGTGAGAGATGCCATAGCAATAGGTTGTTGAGAAGGGAAAACGGAACAAAGCCAAAGACAAGGATATGCTGTCTACTTTACTcggctttgtttttttttttttacacggtTTAAAAATGAAAAGTATGAAGCAATTATATTATTCTAACCCCGTAAAGTATCCGCACTTGCGCGTCTTGTCATGAGCTATTGGCGGTGTGAATGAAGGCGTGCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU795879 lncRNA downstream 21957 33828124 ~ 33828678 (-) True G699431
TU795878 lncRNA downstream 22640 33827760 ~ 33827995 (-) True G699430
TU795877 lncRNA downstream 23977 33826419 ~ 33826658 (-) True G699429
TU795875 lncRNA downstream 26213 33824073 ~ 33824422 (-) True G699427
TU795827 lncRNA downstream 62218 33757774 ~ 33788417 (-) True G699381
TU795892 lncRNA upstream 10376 33861265 ~ 33861485 (-) True G699443
TU795894 lncRNA upstream 16854 33867743 ~ 33868222 (-) True G699445
TU795899 lncRNA upstream 20766 33871655 ~ 33871859 (-) True G699450
TU795900 lncRNA upstream 21013 33871902 ~ 33872117 (-) True G699451
TU795905 lncRNA upstream 32814 33883703 ~ 33886933 (-) True G699456
XM_021612425.2 mRNA downstream 9033 33831672 ~ 33841602 (-) True LOC110529836
XM_036985355.1 mRNA downstream 28397 33719374 ~ 33822238 (-) False cdc42bpab
XM_036985370.1 mRNA upstream 124599 33975488 ~ 34009371 (-) False LOC110529840
XM_036985371.1 mRNA upstream 124599 33975488 ~ 34009377 (-) True LOC110529840
XM_036985372.1 mRNA upstream 166121 34017010 ~ 34029131 (-) False ankef1a
XM_021612441.2 mRNA upstream 285669 34136558 ~ 34157637 (-) True LOC110529846
XR_005052864.1 mRNA upstream 404626 34255515 ~ 34257262 (-) True LOC110529843
TU794745 other downstream 860574 32989245 ~ 32990061 (-) True G698356
TU794118 other downstream 1351225 32498799 ~ 32499410 (-) True G697774
TU793919 other downstream 1633086 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other downstream 1633086 32214486 ~ 32217549 (-) True LOC110529804
TU792983 other downstream 2170900 31657726 ~ 31679735 (-) True LOC110529793
TU795919 other upstream 92133 33943022 ~ 33952356 (-) True G699468
TU795985 other upstream 172402 34023291 ~ 34023885 (-) True ankef1a
TU798118 other upstream 1732109 35582998 ~ 35589877 (-) True G701454
TU798044 other upstream 1790466 35641355 ~ 35687636 (-) False LOC110529865
TU798045 other upstream 1790466 35641355 ~ 35687465 (-) False LOC110529865

Expression Profile