RNA id: TU795920



Basic Information


Item Value
RNA id TU795920
length 915
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G699469
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 33944883 ~ 33945878 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCACACAGTTGAGAACAACCAGTCCTTGTTGGCACATGATGGCCAATGAATCTGCTTGGGAAACATCAGCCACAATGATTTCAACTTCAGTCCTTAACTCCGGCTTACCTGGAAACAGAGAGCATttagaaagggaaaggggaatacctagtctgttgtacaACTGCATGtactcaactgaaatgtgtcttccgcgtttaacccaacccctctgaatcactGATCATATTGTTTGCATTGGTGACCATTACTAAGCAAGTCGCAAGCCAGTGGGATCAATATCAACTAAGATtaaacagcagagtccctgtgtACCCAGTTAAATATCAAGACACCTGTTTAACAGTCAAGTTCAGCAGTGTTGTTGTTCACCCGTAGAGAACAACGGACACTGCGTGCCCatacaacaaaacaaacaaaaaaaggttCCTGAGGGGTTCTTTGTCAGAGGTCATATGTGTAACCATTTTTCAGGTCGGGTTCTTCACTGCTGTGATGGCTGTGAAGACCCATCctgttctttccctctcctccatgTTTTGCTTTATGCCATGAAACGATAGATTGTTAAAAAGGTTCCTGTAattttacagtacagtagaggctACTGGTTGCAGTGAAAGTACAGTAAACCACAAGTTAGTGAATGTTGTGTATTTGTGCCCAGTGTTGTACCAGTTTAAGTGGTTGGTGGTTATGTCGTTAAAGATTGAGCACCTCTTTTACTTGTAACACTGACAGTTCTGCAATCTTTGGGACCATGAAGAGCTGCACTGTTAAGAGGTTACTGTGCAGTGTTTCCCCTGGGATTTTTTTTTCAGCAGTGGTGGCAAGGTTAGCAGGGGGGTGGGTGTGCATTGTtactagtgttagcgcaatgatatgctagctgttcccatagacttccagtcatgg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU795906 lncRNA downstream 57094 33887513 ~ 33887789 (-) True G699457
TU795905 lncRNA downstream 57950 33883703 ~ 33886933 (-) True G699456
TU795900 lncRNA downstream 72766 33871902 ~ 33872117 (-) True G699451
TU795899 lncRNA downstream 73024 33871655 ~ 33871859 (-) True G699450
TU795894 lncRNA downstream 76661 33867743 ~ 33868222 (-) True G699445
TU795925 lncRNA upstream 6795 33952673 ~ 33955182 (-) False G699474
TU795927 lncRNA upstream 6795 33952673 ~ 33955182 (-) True G699474
TU795929 lncRNA upstream 9699 33955577 ~ 33955914 (-) True G699476
TU795932 lncRNA upstream 12693 33958571 ~ 33958856 (-) True G699479
TU795933 lncRNA upstream 13135 33959013 ~ 33959233 (-) True G699480
XM_021612425.2 mRNA downstream 103281 33831672 ~ 33841602 (-) True LOC110529836
XM_036985356.1 mRNA downstream 122645 33719374 ~ 33822238 (-) False cdc42bpab
XM_036985370.1 mRNA upstream 29610 33975488 ~ 34009371 (-) False LOC110529840
XM_036985371.1 mRNA upstream 29610 33975488 ~ 34009377 (-) True LOC110529840
XM_036985372.1 mRNA upstream 71132 34017010 ~ 34029131 (-) False ankef1a
XM_021612441.2 mRNA upstream 190680 34136558 ~ 34157637 (-) True LOC110529846
XR_005052864.1 mRNA upstream 309637 34255515 ~ 34257262 (-) True LOC110529843
TU794745 other downstream 954822 32989245 ~ 32990061 (-) True G698356
TU794118 other downstream 1445473 32498799 ~ 32499410 (-) True G697774
TU793919 other downstream 1727334 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other downstream 1727334 32214486 ~ 32217549 (-) True LOC110529804
TU792983 other downstream 2265148 31657726 ~ 31679735 (-) True LOC110529793
TU795985 other upstream 77413 34023291 ~ 34023885 (-) True ankef1a
TU798118 other upstream 1637120 35582998 ~ 35589877 (-) True G701454
TU798044 other upstream 1695477 35641355 ~ 35687636 (-) False LOC110529865
TU798045 other upstream 1695477 35641355 ~ 35687465 (-) False LOC110529865
TU798046 other upstream 1695477 35641355 ~ 35705313 (-) True LOC110529865

Expression Profile