RNA id: TU795925


Basic Information

Item Value
RNA id TU795925
length 2420
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G699474
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 33952673 ~ 33955182 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgcgTCTTTATTAAATCAATaacttattttttacattgtttccTCACTGAtttgtgacatgtattaatgccaaaataacatgcaaaacaggccccacctgccctgaatgatgggtcaccactgagagagagaggacagagagagacagcaagaggatgaaagaaagaaatagaaAGAGATAGCGGGGAGGAGAGATAAGGTAAACAGAAAgtcagaggagaaagaaaggaagaacaGAAAAGacaagagagaaagggagcgagagataGTTAAATAGAGAGTGAATGCAGGGCTGGGAGCACCCGATAGGTGTTTTGCTCAGCAGCCCACTCTAAACATCATGCCTAACTGGTAGGGTGGAGGCTGTTTGCTGGACTGAGGAAGGGATCAGTCAGAAGAggggaggataagagaggagatggagagtgggagagagcaaAGGAGAAGTGAAGAGGAGACAAGACAGCAGGAGAGGATTGAGTAGAAAGGTGATTGAAGAGGGGATGAAGAgatgaggggaaaggagagggagacggaAGAGGGGATGAAGAgatgaggggaaaggagagggagagagcatgaatAACATCACACCCACGATGGCTGGATgtggggtagggagaggagagcagggaagaGGGATGGGGCTCCTGTAGCCTATGTGCATAGGGAAACAGACCACTGCATCCTCCTGTcttgctctccttctccctttccctgTTCGTTTCCTCAGCAACACGTATAGCTATGCTATGCACCCTGTACTTAACCACGCTACTTAACAATTACTCTCCCACAGTTTTATGATTGAACAAACCTGTCTATTTCCCTCTGTATCACTACAGTAGAACGAGaacactgctctctctgtctctctctctgtaatgctCTGCTAACAGAGTTGTTGCGATAGTGGTGGtggaaggggagagacagagctgAAGAGGGAAGGGAGGCTAAGGAGGGAAGAGAAAGGAGGTTGAGTCACAGTCTAGAGACAATGCCTCCCAGGTCCTTCCAACCTTGACCCTCCTCATTCACGTAACCACATCTGTTACCCATGATAAACCCCGCCTCCCCCATCCATTCTGGCTAAAAGTGTATACATGGACTTTTATTTGAGGTTAAATATTGTACCATCCCATGTCTCCTCTCACAGGCGAATGACCTTAACTGACAGCTCATCTAGTTAGTGGCGTGTAAATATTTGGGAAGTGGGAAGGGAATGTGTAATTAGAGAAACCCCACCACCTAGTGGGGAGGTTGGGTCCTGAATGTGCTGATGGGCATTGGTGTAGACCTCATTTGAAACCATTTTTGTTAGCTTATAAACATGATTTAGGTCGCAGTCTGAGGCGATATTTGTCATTACATTTTCAGGTTaccatatgtgtgtgtttatacttgTACAGAGCAGTATGTACTGCGTTGCTTGTTATTTTTATATAACACAAAAACAGAATAGGACCACGTTTATAAAAAACTGGTATTATCCGGAAGTATCTGAAACACCCAAAGTCTTTCTTATAATGCCCTTGGACTAGTCTGATTAAATGCCATGTGacgagcacacgcacacacactgtggcAAAATATGTGTGTTAAAATGTGAATTAAAACACAGAATAAAGAACCGAGAGGCCACAGTCCTTTCTTGGCTACAAGACCACACAACAGCCCTTAGACTAGTCATCCACTACATCCTACTGTGGAGAGCTGTAATCTGGGTCAAGGACACTCCCTTACACATTAACAACACGAATAAGTCACTTGGTTTACGGACAATTGATTTGAAACCCATCGAGAGATTGAGTGACACCTCTGCATGACCAAAATTCTGAAGCCATTAAAAGGACAGTTGAAACGGGCCACGAGAGACACACAGACTTCAGACGAGAATGGTAACAATGTGGCCGGATGTCTGAATGCCTGTGTCCTCAGCCTGATAGTGTACGGCTTTAAGGGGAGACAGATACAACTTTAAGGGGATGAGGTTTGTCCATGTGACCTAATATTGACAGGGGGTTCGAGTATCGCTCAACACCCTAATTCGCCTGTACACCATGGCACTTCAtgtagatctgaaaggattggatGGGTATAAGCAATATGGTGAATATACTAACAAGCCCACCAGAGGGCAAAGTGAAGATATTACCCATTTCTATATTGCTAACAAAAGAACTGTTCAAATCCAAACCTCTCAGATATAATAGAAATGCCACCGCCACACAGATGCACAAAAATGCACCAGAATTTAGCAGCAAAACATGTCCTAAGGGTTGGGATTGGGCACAGGCAGGAGTCCTTTTTCTCAGACCCTCTCGTCAGAATCTCTTCACTGAGAACACCAGGCCATGTCTGTTGAGGCGGTCAATGAGAGTTGTCCTGGCAAATGCAGCTCCTGGACTGTACACTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU795920 lncRNA downstream 6795 33944883 ~ 33945878 (-) True G699469
TU795906 lncRNA downstream 64884 33887513 ~ 33887789 (-) True G699457
TU795905 lncRNA downstream 65740 33883703 ~ 33886933 (-) True G699456
TU795900 lncRNA downstream 80556 33871902 ~ 33872117 (-) True G699451
TU795899 lncRNA downstream 80814 33871655 ~ 33871859 (-) True G699450
TU795929 lncRNA upstream 395 33955577 ~ 33955914 (-) True G699476
TU795932 lncRNA upstream 3389 33958571 ~ 33958856 (-) True G699479
TU795933 lncRNA upstream 3831 33959013 ~ 33959233 (-) True G699480
TU795939 lncRNA upstream 11953 33967135 ~ 33967427 (-) True G699486
TU795940 lncRNA upstream 13481 33968663 ~ 33969244 (-) True G699487
XM_021612425.2 mRNA downstream 111071 33831672 ~ 33841602 (-) True LOC110529836
XM_036985356.1 mRNA downstream 130435 33719374 ~ 33822238 (-) False cdc42bpab
XM_036985370.1 mRNA upstream 20306 33975488 ~ 34009371 (-) False LOC110529840
XM_036985371.1 mRNA upstream 20306 33975488 ~ 34009377 (-) True LOC110529840
XM_036985372.1 mRNA upstream 61828 34017010 ~ 34029131 (-) False ankef1a
XM_021612441.2 mRNA upstream 181376 34136558 ~ 34157637 (-) True LOC110529846
XR_005052864.1 mRNA upstream 300333 34255515 ~ 34257262 (-) True LOC110529843
TU795919 other downstream 317 33943022 ~ 33952356 (-) True G699468
TU794745 other downstream 962612 32989245 ~ 32990061 (-) True G698356
TU794118 other downstream 1453263 32498799 ~ 32499410 (-) True G697774
TU793919 other downstream 1735124 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other downstream 1735124 32214486 ~ 32217549 (-) True LOC110529804
TU795985 other upstream 68109 34023291 ~ 34023885 (-) True ankef1a
TU798118 other upstream 1627816 35582998 ~ 35589877 (-) True G701454
TU798044 other upstream 1686173 35641355 ~ 35687636 (-) False LOC110529865
TU798045 other upstream 1686173 35641355 ~ 35687465 (-) False LOC110529865
TU798046 other upstream 1686173 35641355 ~ 35705313 (-) True LOC110529865

Expression Profile