RNA id: TU796211


Basic Information

Item Value
RNA id TU796211
length 2202
lncRNA type antisense_over
GC content 0.47
exon number 5
gene id G699730
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 34171056 ~ 34177610 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGGTTAACATGGTCAACTTTATTTTGGGGTCCCACCATTTCAAGTTACAGTATCAATTTCAGAAAATATTTACAGTCAAGTGAACACACAAAAGAAAGTTGGAAtgtcaataaaaaaaatcatTGATACAACTCAAGATACAAAAAAAGTGTCAACAGGCTCTTGTTTTGTAAACACTAACACTTATGGGAATGAATCTAAACTGCATATGATCAATGCAGGTCAAGGGATTTTGGATCGAGAAGGAGGGCAAGGGGGGAAATTCCAGGTTCATGAACAAACATCAAAGTCATCCTGTCTTAATTTACAACACTACTAGTGTCAAAGCAAACTGgtgtagttacagtaacactgcaGCTGAGTCAGTTGGTCTAGTCAACCTCCTCCATCCTGGATGTGTCCTCGTCTCCCTCCAGGAGAGGCATGTCCTCCACAGGGGCTGAGGTTGGCTCCTCGGGGGTCAGGTCATCCTCGTCAACCCAGTcctagcttgatcattctgtagATGCGGTTGGAGTGTGTCTGAGGGTCATCCAAGGTGAACCCAGAGGACAACAGAGCCGTCTCAAACAGCAGAAGGACTAGGTCCTTCACTGATTTATCATTCTTATCAGCCTCTGCCTTCTGCCTCAGGGTCTCCACAATGGGGTGGTCTGGGTTGATCTCCAGGTGCTTCTTGGCAGCCATGTAGCCCATGGTGGAGTTGTCCCTCAGGGCCTGGGCCTTCATGATCTTGCAGAGGTTCTCAAACTGAGACTTCTGTTCTTCATGCCTCTTCTTCATGTCCTCGTCCTCAGGCAGCTCCAGACCCTCCTTGGTCACAGAGACAAGGGTCTTGCCATCATACTCCTTCAGCTGCTGGACACAGTACTCATCAATAGGCTCAATCATGTAGATTACTTCCAGGCCGGCCTTTCGAAGGCGTTCCACGAATGCAGAGTTAGCCACCTGGTCTCTGGTCTCGGTGATGTAGTAGATATGTTTCTGGGTTTCCTTCATGCGTGTGACGTAGTCTTTGAGGGATACCATCTCGTCCCCTGAGGCTGAGGAGTAGTAGCGCAGCATGTCTGACAGCCTCTTACGGTTCTGAGAGTCCTCATGGATCCCACCTTGATGTTCTTGGAGAACTGCTCGTAGTACTTCTTGTAGTTTTCTTTGTCCTCTGACAGCTCAGTGAAGAGCTCTATACACTTCTTGACCAGGTTCTTGCGGATCACCTTGAGGATCTTGCTCTGCTGCAGCATCTCTCTGGAGATGTTTAGGGGGAGATCCTCAGAGTCCACCACACCCTTGATGAAGTCTGGAGAAAATGACAGAGACAATTGGTCAGACACCTTCAATTAGATTATAGCTCATTCCCAGATCTACGTGAGCATTTGCTTCAGTTCTGTCTGACTCACTGAGGTACTCAGGGATAAGATCATCACAGTTGTCCATGATGAAGACCCTCCTGACGTACAGCTTGAtattgttcttcttcttcttgttttcAAAGAGGTCAAAGGGTGCACGGCGAGGCACAAAGAGCAGGGCACGGAACTCCAGCTGGCCTTCAACTGAGAAGTGCTGTGTAAGTAAACAAACAGAATGCCAACTGCTGAAACCTTAATGTACATGTATATTTGTCGTTCTGAAATTACCTCACCCATTATCAGCTGACTAATACTGGTACTATCTATGACTTCACACATCAGCAAGGGAAACTTAGTAAATAAACAGTGTGGGAACTTATTCTGTTGGCCAATATGAATAGAATATCCTCACCTTGACAGCCAGGTGTTCCTCCCAGTCGTTGGTCAGACTCTTGTAGAACTCTCCATACTCCTCGTTGGTGATGTCATCGGGGTTACGGGTCCACAGGGGCTTGGTCTTGTTCAGCTCCTCCTGGTCAATGTATTTCTCCttgatcttcttcttcttcttcttcttgtcacCGCATGCGCTGTCGTGGTCATGGTCATGGTGATCCTCCTCGTCTGAGCCTACGTCCTCGATCTCAGGTTTGtcaacctctctcttctctccttcttccccatccttcttctcctcttcctcctctgcctCATCGTCACTCACTTCCTTGTCACGCTCCTTCTCCACCTGAACAGAGAGGATCATGAGAATGTTAGGGGACACATTCAATGtgttgatgtactgtagctgACTTTGAGTGGGTAGTTGTCAAAAAATATTTCATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU796054 lncRNA downstream 53165 34117662 ~ 34117891 (-) True G699592
TU796044 lncRNA downstream 60768 34109793 ~ 34110288 (-) True G699582
TU795993 lncRNA downstream 137600 34033221 ~ 34033456 (-) True G699537
TU795987 lncRNA downstream 152499 34018141 ~ 34018557 (-) True G699531
TU795970 lncRNA downstream 154819 34015919 ~ 34016237 (-) True G699515
TU796241 lncRNA upstream 6722 34184332 ~ 34184851 (-) True G699755
TU796243 lncRNA upstream 11456 34189066 ~ 34189394 (-) True G699757
TU796289 lncRNA upstream 96740 34274350 ~ 34274640 (-) True G699803
TU796365 lncRNA upstream 199938 34377548 ~ 34377783 (-) True G699866
TU796367 lncRNA upstream 202297 34379907 ~ 34380295 (-) True G699868
XM_021612441.2 mRNA downstream 13419 34136558 ~ 34157637 (-) True LOC110529846
XM_036985372.1 mRNA downstream 141925 34017010 ~ 34029131 (-) False ankef1a
XM_036985371.1 mRNA downstream 161679 33975488 ~ 34009377 (-) True LOC110529840
XM_036985370.1 mRNA downstream 161685 33975488 ~ 34009371 (-) False LOC110529840
XM_021612425.2 mRNA downstream 329454 33831672 ~ 33841602 (-) True LOC110529836
XR_005052864.1 mRNA upstream 77905 34255515 ~ 34257262 (-) True LOC110529843
XM_021612449.2 mRNA upstream 367546 34545156 ~ 34550128 (-) True LOC110529848
XR_005052865.1 mRNA upstream 620235 34797845 ~ 34799304 (-) True LOC118965512
XM_021612451.2 mRNA upstream 1124944 35302554 ~ 35304730 (-) True LOC110529850
XM_021612453.2 mRNA upstream 1129318 35306928 ~ 35321805 (-) True LOC110529851
TU795985 other downstream 147171 34023291 ~ 34023885 (-) True ankef1a
TU795919 other downstream 218700 33943022 ~ 33952356 (-) True G699468
TU794745 other downstream 1180995 32989245 ~ 32990061 (-) True G698356
TU794118 other downstream 1671646 32498799 ~ 32499410 (-) True G697774
TU793920 other downstream 1953507 32214486 ~ 32217549 (-) True LOC110529804
TU798118 other upstream 1405388 35582998 ~ 35589877 (-) True G701454
TU798044 other upstream 1463745 35641355 ~ 35687636 (-) False LOC110529865
TU798045 other upstream 1463745 35641355 ~ 35687465 (-) False LOC110529865
TU798046 other upstream 1463745 35641355 ~ 35705313 (-) True LOC110529865
TU798297 other upstream 1723013 35900623 ~ 35904272 (-) False G701618

Expression Profile