RNA id: TU796241


Basic Information

Item Value
RNA id TU796241
length 520
lncRNA type antisense_over
GC content 0.47
exon number 1
gene id G699755
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 34184332 ~ 34184851 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGCATTTGACATATTGTCAAAAACTCATTATTTATTTAACTCGATATATCCCCCAGCCCCAACTAGCCTAGGCTAGTAGTGGCGTACTACGCAGTCATACTTTTGAAGGCAAAATAATGGGCTGCATTACAGCAAGGCAAGGAATAGACTAGATTAGGTCCAGTCATACCTTTGAAGGCGGGCAGCTTTTGCAGCTCTCTGTTGTTGCTGAGGCTGAAGCGGGACGAGCTCTGCCTCTTGTCCTTCTTGACAGGCATCTGGGAACCCAGCTGCTTGCCCTTCAGCAGCTGAGTGGTAGGAGGGACACTGTTACTGCCTTTTCTGTTGGAGCCCTGCTGTATGAAGGGAGGGAAagagtagaggtggatcagagcaTGCACCTGGGTTTGTTCATGAGACACCaaacgaaaaaaaaaaaaaagacaaacggGGAGGGACTATTCATTTCAAAAGGTTTTAGCACAACCCAGTGTTGTCCCCAATCTCCCCTAGGTTGGATATGTAATCTGGTGAATGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU796211 lncRNA downstream 6722 34171056 ~ 34177610 (-) False G699730
TU796213 lncRNA downstream 6722 34171056 ~ 34177610 (-) True G699730
TU796054 lncRNA downstream 66441 34117662 ~ 34117891 (-) True G699592
TU796044 lncRNA downstream 74044 34109793 ~ 34110288 (-) True G699582
TU795993 lncRNA downstream 150876 34033221 ~ 34033456 (-) True G699537
TU796243 lncRNA upstream 4215 34189066 ~ 34189394 (-) True G699757
TU796289 lncRNA upstream 89499 34274350 ~ 34274640 (-) True G699803
TU796365 lncRNA upstream 192697 34377548 ~ 34377783 (-) True G699866
TU796367 lncRNA upstream 195056 34379907 ~ 34380295 (-) True G699868
TU796370 lncRNA upstream 197797 34382648 ~ 34382888 (-) True G699871
XM_021612441.2 mRNA downstream 26695 34136558 ~ 34157637 (-) True LOC110529846
XM_036985372.1 mRNA downstream 155201 34017010 ~ 34029131 (-) False ankef1a
XM_036985371.1 mRNA downstream 174955 33975488 ~ 34009377 (-) True LOC110529840
XM_036985370.1 mRNA downstream 174961 33975488 ~ 34009371 (-) False LOC110529840
XM_021612425.2 mRNA downstream 342730 33831672 ~ 33841602 (-) True LOC110529836
XR_005052864.1 mRNA upstream 70664 34255515 ~ 34257262 (-) True LOC110529843
XM_021612449.2 mRNA upstream 360305 34545156 ~ 34550128 (-) True LOC110529848
XR_005052865.1 mRNA upstream 612994 34797845 ~ 34799304 (-) True LOC118965512
XM_021612451.2 mRNA upstream 1117703 35302554 ~ 35304730 (-) True LOC110529850
XM_021612453.2 mRNA upstream 1122077 35306928 ~ 35321805 (-) True LOC110529851
TU795985 other downstream 160447 34023291 ~ 34023885 (-) True ankef1a
TU795919 other downstream 231976 33943022 ~ 33952356 (-) True G699468
TU794745 other downstream 1194271 32989245 ~ 32990061 (-) True G698356
TU794118 other downstream 1684922 32498799 ~ 32499410 (-) True G697774
TU793920 other downstream 1966783 32214486 ~ 32217549 (-) True LOC110529804
TU798118 other upstream 1398147 35582998 ~ 35589877 (-) True G701454
TU798044 other upstream 1456504 35641355 ~ 35687636 (-) False LOC110529865
TU798045 other upstream 1456504 35641355 ~ 35687465 (-) False LOC110529865
TU798046 other upstream 1456504 35641355 ~ 35705313 (-) True LOC110529865
TU798297 other upstream 1715772 35900623 ~ 35904272 (-) False G701618

Expression Profile