RNA id: TU796372


Basic Information

Item Value
RNA id TU796372
length 614
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G699873
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 34389663 ~ 34393886 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaccctttactcagtacttgtttgaagcacctttagcagtgattacagtgttgagtcttcttgggtatgacactactaacttggcacacctgtatttggggtgtttctcccattattctttGCAAAtcctaaatgtggaaaaagtgaaggaatctgaatactttccaaatgcactgtataccatCATAGTGGATATGTTAGAGAATGTTATTATGTCATAGTGGCTATTTTAGAGTAAGTCATTGTCAGTTTAAGAGAATTACATTATGATGTAATTGTGGCCGTTTTAGATAATGCCATTATGATGTCATAGAATCTCTTAAATAATGTCACTTTTGATTTTCCTGAATCCTTTATGTTTCAGAAGGTTATGACAGTGATAGTAATTTAGAGCAGCAACACACTAGAGACAATTCAATGTGCTTGTTCTTCACCCCCTTACAAACACATGGATATTGTGTATCAAGGCTATCATAGGTCCATAAATGTATATAGCCTACTATATGAATACCCTCATTCAAGAACATACAAATGTTCCCATCATACATTTAGGAGAGAATACTGCCAATCTGTGGAAATATTACTCAGTTGCTCGCaaaccagtaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU796371 lncRNA downstream 8920 34382927 ~ 34383463 (-) True G699872
TU796370 lncRNA downstream 9495 34382648 ~ 34382888 (-) True G699871
TU796367 lncRNA downstream 12088 34379907 ~ 34380295 (-) True G699868
TU796365 lncRNA downstream 14600 34377548 ~ 34377783 (-) True G699866
TU796289 lncRNA downstream 117743 34274350 ~ 34274640 (-) True G699803
TU796379 lncRNA upstream 2906 34395902 ~ 34396112 (-) True G699876
TU796380 lncRNA upstream 3876 34396872 ~ 34397200 (-) True G699877
TU796422 lncRNA upstream 46403 34439399 ~ 34525517 (-) False G699898
TU796437 lncRNA upstream 104344 34497340 ~ 34517279 (-) True G699904
TU796423 lncRNA upstream 126207 34519203 ~ 34521311 (-) True G699898
XR_005052864.1 mRNA downstream 135121 34255515 ~ 34257262 (-) True LOC110529843
XM_021612441.2 mRNA downstream 234746 34136558 ~ 34157637 (-) True LOC110529846
XM_036985372.1 mRNA downstream 363252 34017010 ~ 34029131 (-) False ankef1a
XM_036985371.1 mRNA downstream 383006 33975488 ~ 34009377 (-) True LOC110529840
XM_036985370.1 mRNA downstream 383012 33975488 ~ 34009371 (-) False LOC110529840
XM_021612449.2 mRNA upstream 152160 34545156 ~ 34550128 (-) True LOC110529848
XR_005052865.1 mRNA upstream 404849 34797845 ~ 34799304 (-) True LOC118965512
XM_021612451.2 mRNA upstream 909558 35302554 ~ 35304730 (-) True LOC110529850
XM_021612453.2 mRNA upstream 913932 35306928 ~ 35321805 (-) True LOC110529851
XM_021612459.2 mRNA upstream 1033320 35426316 ~ 35429137 (-) True LOC110529854
TU795985 other downstream 368498 34023291 ~ 34023885 (-) True ankef1a
TU795919 other downstream 440027 33943022 ~ 33952356 (-) True G699468
TU794745 other downstream 1402322 32989245 ~ 32990061 (-) True G698356
TU794118 other downstream 1892973 32498799 ~ 32499410 (-) True G697774
TU793920 other downstream 2174834 32214486 ~ 32217549 (-) True LOC110529804
TU798118 other upstream 1190002 35582998 ~ 35589877 (-) True G701454
TU798044 other upstream 1248359 35641355 ~ 35687636 (-) False LOC110529865
TU798045 other upstream 1248359 35641355 ~ 35687465 (-) False LOC110529865
TU798046 other upstream 1248359 35641355 ~ 35705313 (-) True LOC110529865
TU798297 other upstream 1507627 35900623 ~ 35904272 (-) False G701618

Expression Profile