RNA id: TU796432


Basic Information

Item Value
RNA id TU796432
length 278
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G699903
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 34525613 ~ 34530768 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cggtggcatgtgcctgtaatccaagtcactgggaggctgaggttggtggatcaagtgagctgaggagctctgggctgcagcactctatgtcgaacgggtgtccacgctaagttcggtatcgatatggtgttcctgggggagcccgggaccaccaggttgtctaaggaggaatgaaccggcccaggtcggaaacgaagcaggtcaaatcccccgtgctgtccagtagtgggataatacctgtgagtagatgctgcagtgcagccttggcaaaacatcga

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU796431 lncRNA downstream 943 34525613 ~ 34528316 (-) False G699903
TU796422 lncRNA downstream 3742 34439399 ~ 34525517 (-) False G699898
TU796423 lncRNA downstream 7948 34519203 ~ 34521311 (-) True G699898
TU796437 lncRNA downstream 11980 34497340 ~ 34517279 (-) True G699904
TU796380 lncRNA downstream 132059 34396872 ~ 34397200 (-) True G699877
TU796514 lncRNA upstream 23049 34553817 ~ 34556091 (-) False G699979
TU796515 lncRNA upstream 23049 34553817 ~ 34554676 (-) True G699979
TU796576 lncRNA upstream 112010 34642778 ~ 34643077 (-) True G700038
TU796602 lncRNA upstream 128544 34659312 ~ 34659599 (-) True G700064
TU796604 lncRNA upstream 129238 34660006 ~ 34660550 (-) True G700066
XR_005052864.1 mRNA downstream 271997 34255515 ~ 34257262 (-) True LOC110529843
XM_021612441.2 mRNA downstream 371622 34136558 ~ 34157637 (-) True LOC110529846
XM_036985372.1 mRNA downstream 500128 34017010 ~ 34029131 (-) False ankef1a
XM_036985371.1 mRNA downstream 519882 33975488 ~ 34009377 (-) True LOC110529840
XM_036985370.1 mRNA downstream 519888 33975488 ~ 34009371 (-) False LOC110529840
XM_021612449.2 mRNA upstream 14388 34545156 ~ 34550128 (-) True LOC110529848
XR_005052865.1 mRNA upstream 267077 34797845 ~ 34799304 (-) True LOC118965512
XM_021612451.2 mRNA upstream 771786 35302554 ~ 35304730 (-) True LOC110529850
XM_021612453.2 mRNA upstream 776160 35306928 ~ 35321805 (-) True LOC110529851
XM_021612459.2 mRNA upstream 895548 35426316 ~ 35429137 (-) True LOC110529854
TU795985 other downstream 505374 34023291 ~ 34023885 (-) True ankef1a
TU795919 other downstream 576903 33943022 ~ 33952356 (-) True G699468
TU794745 other downstream 1539198 32989245 ~ 32990061 (-) True G698356
TU794118 other downstream 2029849 32498799 ~ 32499410 (-) True G697774
TU793920 other downstream 2311710 32214486 ~ 32217549 (-) True LOC110529804
TU798118 other upstream 1052230 35582998 ~ 35589877 (-) True G701454
TU798044 other upstream 1110587 35641355 ~ 35687636 (-) False LOC110529865
TU798045 other upstream 1110587 35641355 ~ 35687465 (-) False LOC110529865
TU798046 other upstream 1110587 35641355 ~ 35705313 (-) True LOC110529865
TU798297 other upstream 1369855 35900623 ~ 35904272 (-) False G701618

Expression Profile