RNA id: TCONS_00005797


Basic Information

Item Value
RNA id TCONS_00005797
length 2201
lncRNA type sense_over
GC content 0.44
exon number 2
gene id XLOC_001788
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 573667 ~ 592860 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTCTTCACCTCCTACACTGTGAAAAAGTGCCTCTTCTcttcatttttgtcttgtttgaagCCTAAATATCTCAATATTCTCTAATGAAGAAGCTTTTTCTTGACATTTAAGTCAAAATTTAGTAAGttcttccttaaaacaagcaaaatagttGAACAATGAGGTAAGCAAAAGAGGCTagtgttcactttgactttaatATATTTTGCTTGCCTCATTGTCTGatcatttgcttgttttaaggacaaactcACTTCTTTTTGACTTGTATGTCTTCTTCATTTAAGAATATTGAGATATTTAGACTTCAAACAGGACAAAACTCAAGAGAAGAGGCACTTATTACAGTGTAAGAGGTGAAGAAATGTCTCCAATACTCAATCCATGCAGTTCAGTGAGGAAAGCATGCATGTTTACTACCTAACAAACAGTTTTGTGTAGCTTACAAGTCATCACTGGTCATCTTTTCCCTCTGAGCTGCATGTTTTGCCACATCAGCGCCTTCAGAAGTGTGTTTTCCACAGCTGTGCGGAGAACATGCACTGATGAAGCGCAAGACAAACAAAACACACTCCAGTCCAGCTGGGGGCGCTGATGCACCAATAAAATCCCCCTCCAGAGAATACGACGATGATGACGGGAGTCACACAAAACTCAAGAAGTTTCACATTTTCTTATGATGTTGACTACAGTAGATCTTTATTCTGCATTTCAGAGCTGTGATGAcgggtgtcggtttcaaacaagcctgaaggactcaataagtttgatcaggtgtgtttaatgatggttatcgctaaactgtgcagagctgcagccctcctggaactggatttgacacctgtgttatTGATGAATGTGGACTTGTTTTATACTGActgattaaaatgagctgaatgtTGCTGTTTTACAGCTGGAAAAGGCAAAGATCAGCTATTAAAGGACTCTGATTGGTTTGGACTGAAATAAGTCATCCGTATCCACCTAGAATGACTCGAGGATGTCTTTAATCattggattatttttattttagtgtgaaCGAACCCTTGAATGCACCTCGGTTATTCCCTCAGAGAGCAGATGTTGACGAGTGGTGGAGCGCTCCGCGTCTGATGTGGCAGCGGTTATCATGCTAGCTGTGTTTGCATGTACATAAcacatcattttaattattaaagctTTTCACTAATCGGCTTGACTTTGTTTTGGCCAGCGTATCATAGCAGGACGTGTTCTAGTTAGCCTAAATCTAATCCACACATGCAGAAAGCGCCGCTGTATCCTCCTCTGAACGCTGGTTCTAGCCCAGTTCCTGCTCTGTGTGCGTCTCTTTACTTTGATTTCCTTCATCTGTGAGTAAGCTGACCGAGCTGCTCGTGTACAGGAATCCCTCATGATGCTGATCTACAGCTCCACTCATCTGCGCTGACTCTTCTACTGTACATCTGCTTTGTTTGGAGACGTCCTCATGTTCTCTGGGGAGATTAGGAAGCGGTGCTCCTTTATTCTGATGAACGCTGTGTGTTGTTGGATGTGAACATTGCAAGCCATATGAATGAAGAGTGTGTCAGTGTTACTCAgagctcgtgtgtgtgtgtgtgagactcctGAGACGTCACGCGGGTGTTTGAGCAGTCTTTTCTGCATGGCCTGATGATGTTCTGCGAGAGGTTTGACCACTGATGAAGGCTTCTGCTTCATGTTGACAGAAATGAAATGGGCTGTTTGCTGTTTTGGATAAGGGCATTTGTGAAGCTCCGGTTTGAGCAGTTGATCAAATACAGGACAATATTAAAGTCATTTTCCAAGTCTTGTGTGTTTTATTGCTCATTCTCAGACACTCCTTGCGCACTTCagcttttaaaatcagtttttgaCAAGAGCAGACTAAATTAAAGATGTTTTTACCTAATCTGTtaggacttttttttatttttgattgattgaGCTCTGACAGCAGGGAGGAGCTCgcagtagagccgctgctcctccacatggagagaagtcagctgaggtggctcgggcatctgttatggatgcctcctggacgcctacctagggaggttttccaggcatgtcccatcgGGAGGAGggctcggggaagacccaggacacgctggagggactatgtttcCCGGCTGGCCTGAGAACGCCTTGGCATTCCCCTtgaggagctggagaaagtgtctggggagaggga

Function

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0048738 cardiac muscle tissue development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0030154 cell differentiation biological_process
GO:0060395 SMAD protein signal transduction biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0048264 determination of ventral identity biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0060026 convergent extension biological_process
GO:0071141 SMAD protein complex cellular_component
GO:0071144 heteromeric SMAD protein complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0005515 protein binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0031625 ubiquitin protein ligase binding molecular_function
GO:0070411 I-SMAD binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005663 lncRNA upstream 47015 541627 ~ 543589 (+) False XLOC_001786
TCONS_00005664 lncRNA upstream 47015 542855 ~ 543589 (+) True XLOC_001786
TCONS_00005792 lncRNA upstream 47022 540432 ~ 543582 (+) False XLOC_001786
TCONS_00005795 lncRNA upstream 47541 540909 ~ 543063 (+) False XLOC_001786
TCONS_00005794 lncRNA upstream 47541 540909 ~ 543063 (+) False XLOC_001786
TCONS_00005798 lncRNA downstream 140927 733787 ~ 793309 (+) False XLOC_001789
TCONS_00005799 lncRNA downstream 140944 733804 ~ 796894 (+) False XLOC_001789
TCONS_00005800 lncRNA downstream 184481 777341 ~ 793309 (+) False XLOC_001789
TCONS_00005665 lncRNA downstream 192878 785738 ~ 793388 (+) False XLOC_001789
TCONS_00005666 lncRNA downstream 197365 790225 ~ 796241 (+) True XLOC_001789
TCONS_00003586 mRNA upstream 521 573667 ~ 590083 (+) False XLOC_001788
TCONS_00003588 mRNA upstream 944 585719 ~ 589660 (+) False XLOC_001788
TCONS_00003587 mRNA upstream 1176 575929 ~ 589428 (+) False XLOC_001788
TCONS_00003585 mRNA upstream 23997 563252 ~ 566607 (+) True XLOC_001787
TCONS_00003584 mRNA upstream 57976 518546 ~ 532628 (+) True XLOC_001785
TCONS_00003591 mRNA downstream 459731 1052591 ~ 1107558 (+) True XLOC_001792
TCONS_00003592 mRNA downstream 804080 1396940 ~ 1414161 (+) True XLOC_001793
TCONS_00003593 mRNA downstream 997744 1590604 ~ 1591103 (+) True XLOC_001795
TCONS_00003596 mRNA downstream 1046016 1638876 ~ 1675351 (+) False XLOC_001796
TCONS_00003595 mRNA downstream 1046016 1638876 ~ 1675351 (+) False XLOC_001796
TCONS_00003583 other upstream 83348 506563 ~ 507256 (+) True XLOC_001784
TCONS_00003569 other upstream 378657 211782 ~ 211947 (+) True XLOC_001770
TCONS_00003590 other downstream 212384 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003597 other downstream 1072062 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003605 other downstream 1582723 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003616 other downstream 2095705 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003633 other downstream 2392184 2985044 ~ 3026523 (+) True XLOC_001822

Expression Profile

//