RNA id: TU800914


Basic Information

Item Value
RNA id TU800914
length 248
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G704037
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 37771275 ~ 37771522 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGGACTCCCCGTCCTCCTGTTTGCAACGACCGAAAACATAACGCTCGTAGATGACGTTCTTTGCTGGCGTAAAGTAATGTTCAAGAGCATCAAGAATAGCTATAGCGTTACCTTGCTGTGCTGCTGTTAggttcaggttgtgtttgtatacGTGTCGGCATTCAGTTCCCATTATAGTCCTCAAAGTGGCAGCCACTACCTCATCTTCCTTTTCCAGAAGTCCCGTTGCTAGCGCGTAGTCCTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU800913 lncRNA downstream 8469 37762347 ~ 37762806 (-) True G704036
TU800908 lncRNA downstream 10490 37760267 ~ 37760785 (-) True G704035
TU800898 lncRNA downstream 17609 37753467 ~ 37753666 (-) True G704028
TU800895 lncRNA downstream 20354 37750602 ~ 37750921 (-) True G704025
TU800526 lncRNA downstream 184346 37548927 ~ 37586929 (-) True G703684
TU800916 lncRNA upstream 3534 37775056 ~ 37775261 (-) True G704039
TU800919 lncRNA upstream 5954 37777476 ~ 37777685 (-) True G704042
TU800920 lncRNA upstream 6222 37777744 ~ 37778154 (-) True G704043
TU800922 lncRNA upstream 7500 37779022 ~ 37779225 (-) True G704045
TU800941 lncRNA upstream 29813 37801335 ~ 37801564 (-) True G704057
XM_036985435.1 mRNA downstream 144315 37474229 ~ 37626960 (-) False LOC110530908
XM_021612540.2 mRNA upstream 10652 37782174 ~ 37792728 (-) True sod2
XM_021612541.2 mRNA upstream 46350 37817872 ~ 37851843 (-) False acbd3
XM_021612543.2 mRNA upstream 46350 37817872 ~ 37851844 (-) False acbd3
XM_021612544.2 mRNA upstream 46350 37817872 ~ 37851844 (-) False acbd3
XM_021612545.2 mRNA upstream 46350 37817872 ~ 37851844 (-) True acbd3
TU800488 other downstream 279118 37489227 ~ 37492157 (-) True LOC110530908
TU800348 other downstream 409682 37355096 ~ 37361593 (-) True LOC110529880
TU798300 other downstream 1853100 35900623 ~ 35918175 (-) True G701618
TU798297 other downstream 1867003 35900623 ~ 35904272 (-) False G701618
TU798046 other downstream 2065962 35641355 ~ 35705313 (-) True LOC110529865
TU801610 other upstream 266203 38037725 ~ 38038346 (-) True G704702
TU801790 other upstream 541967 38313489 ~ 38313803 (-) True G704874
TU803684 other upstream 1448122 39219644 ~ 39226313 (-) True G706683
TU804129 other upstream 2185439 39956961 ~ 39959613 (-) True slc22a16
TU806574 other upstream 4948249 42719771 ~ 42720699 (-) True G709272

Expression Profile