RNA id: TU801793


Basic Information

Item Value
RNA id TU801793
length 310
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G704877
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 38315706 ~ 38316015 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgttgggctgtatcaccgcctggtacggcaactgctctgcccacaaccgtaaggctctccagagggtagtgaggtctgcacaacgcatcaccgggggcaaactacctgccctccaggacacctacaccacccgatgtcacaggaaggccataaagatcatcaaggacaacaaccacccgagccactgcctgttctccccgctatcatccagaaggcgaggtcagtacatgtgcatcaaagcagggactgagagactgaaaaacagcttcatctcaagaccatcagactgttaaacagccaccacaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU801778 lncRNA downstream 19645 38295787 ~ 38296061 (-) True G704862
TU801771 lncRNA downstream 34697 38280711 ~ 38281009 (-) True G704855
TU801715 lncRNA downstream 36171 38192006 ~ 38279535 (-) True G704800
TU801722 lncRNA downstream 85213 38226612 ~ 38230493 (-) True G704806
TU801638 lncRNA downstream 236087 38079402 ~ 38079619 (-) True G704730
TU802070 lncRNA upstream 341354 38657369 ~ 38657680 (-) True G705135
TU802080 lncRNA upstream 349475 38665490 ~ 38665706 (-) True G705145
TU802190 lncRNA upstream 425327 38741342 ~ 38741544 (-) True G705254
TU802197 lncRNA upstream 429861 38745876 ~ 38746078 (-) True G705261
TU802202 lncRNA upstream 432999 38749014 ~ 38749394 (-) True G705266
NM_001124558.1 mRNA downstream 13417 38284903 ~ 38302289 (-) True LOC100136309
XM_021612548.2 mRNA downstream 54886 38215845 ~ 38260820 (-) False LOC110529892
XM_036985440.1 mRNA downstream 54886 38215845 ~ 38260820 (-) True LOC110529892
XR_002474628.2 mRNA downstream 383743 37930118 ~ 37931963 (-) True LOC110531088
LOC110530911 mRNA downstream 394295 37905170 ~ 37921411 (-) True LOC110530911
XM_021612549.2 mRNA upstream 14678 38330693 ~ 38387308 (-) True LOC110529893
trnal-uaa-3 mRNA upstream 124183 38440198 ~ 38440280 (-) True trnal-uaa-3
LOC110530913 mRNA upstream 471498 38787513 ~ 38801952 (-) True LOC110530913
XR_005052874.1 mRNA upstream 506127 38822142 ~ 38824045 (-) False LOC118965515
XR_002474630.2 mRNA upstream 734734 39050749 ~ 39053399 (-) True LOC110531091
TU801790 other downstream 1903 38313489 ~ 38313803 (-) True G704874
TU801610 other downstream 277360 38037725 ~ 38038346 (-) True G704702
TU800488 other downstream 823549 37489227 ~ 37492157 (-) True LOC110530908
TU800348 other downstream 954113 37355096 ~ 37361593 (-) True LOC110529880
TU798300 other downstream 2397531 35900623 ~ 35918175 (-) True G701618
TU803684 other upstream 903629 39219644 ~ 39226313 (-) True G706683
TU804129 other upstream 1640946 39956961 ~ 39959613 (-) True slc22a16
TU806574 other upstream 4403756 42719771 ~ 42720699 (-) True G709272
TU806781 other upstream 4854745 43170760 ~ 43171082 (-) True G709454
TU808567 other upstream 6222778 44538793 ~ 44539504 (-) True G711133

Expression Profile