RNA id: TCONS_00005665


Basic Information

Item Value
RNA id TCONS_00005665
length 1030
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id XLOC_001789
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 733787 ~ 796894 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAGTGAAGTTGAGATGGGTTTGAGTCGGTCCTCTGGGAACTCtttgggaagagtttcatcactGAAGGTCACCTCTGAAGGATCTGGAGCTCACGGCCGAATCCATCACTGGACACTGCAATGGAAACGGGAGGCTTGTTTTTCTCCAGCTCTCTGTCCGACACTACATCAGCCGCAGCCGCTGGGGACTCAGGTGTGTTTTCCTCACGGTGGAGGAAGGAGAGCGGTTCAGTTTCTCAGAACACCATCAGTAAATTCAGCTTCCTGTCGTTCAGAATTGAGTTTCCTGTGTGCTGTGGCCAATTCAGAGCAACAAAAGAGCTGCAATCTCGAGAGTGCTCTCGGTGGACTGATGTGATGGAGACAACTGCGAATGTGGCCACATATCATCAGCGGGGTCACATACAGTCAGCGGGAACATCCATCAAAATCACAGTCGCCTCCAATTACGCTCCCCTTGAAAAGCACCATGGGTAACGTAACATCATTTCTATTGACTGTTGTGATGCTGAGGAGACACGGCCAGACAGAGTCCTCGCATTAATACAACTGATGACCCTGTTTGTCATTTTCCCCCCCATCATGAGGGTGTCACCTGAAGGAAGTCAATGAGTGGTGCAGATAGACAAAAGCCTGACATGTTTAACCTCTAATATCATTGAGAAACAGTGTACATTTAAACATTAACATTAGTGCATCAGGGCTCTATTTTGGGCCCCCTGCAGTTTAGAATTTACCTTCAAAATCTTGAGCATGAGCGAAAAAAAAAggcaatttaatgttttattacattaaaataactcTGACATGTGGCTTTAGAAGAAACACAAGTAAATGACAGGCTCAGGAAAAAATCTGAAGATCTGAGAGAGGTATTTATATAATTTTCACCGTCCTTTCTTGAAGATGTAATCCAGCACAGCACTACACAACAATCCATTATGCCTCCTATGTATAATACTATAGGTAACCTAATGCTACCAACTCATTCCAGAATTGCGGGTAAATGTcaagcatttttcatttatt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005797 lncRNA upstream 192878 590604 ~ 592860 (+) True XLOC_001788
TCONS_00005663 lncRNA upstream 242149 541627 ~ 543589 (+) False XLOC_001786
TCONS_00005664 lncRNA upstream 242149 542855 ~ 543589 (+) True XLOC_001786
TCONS_00005793 lncRNA upstream 242675 540909 ~ 543063 (+) False XLOC_001786
TCONS_00005801 lncRNA downstream 65967 859355 ~ 889312 (+) False XLOC_001791
TCONS_00005802 lncRNA downstream 84131 877519 ~ 889312 (+) False XLOC_001791
TCONS_00005667 lncRNA downstream 89698 883086 ~ 937042 (+) True XLOC_001791
TCONS_00005803 lncRNA downstream 744911 1538299 ~ 1540732 (+) True XLOC_001794
TCONS_00005668 lncRNA downstream 904677 1698065 ~ 1713235 (+) True XLOC_001799
TCONS_00003589 mRNA upstream 193891 589501 ~ 591847 (+) False XLOC_001788
TCONS_00003586 mRNA upstream 195655 573667 ~ 590083 (+) False XLOC_001788
TCONS_00003588 mRNA upstream 196078 585719 ~ 589660 (+) False XLOC_001788
TCONS_00003587 mRNA upstream 196310 575929 ~ 589428 (+) False XLOC_001788
TCONS_00003585 mRNA upstream 219131 563252 ~ 566607 (+) True XLOC_001787
TCONS_00003591 mRNA downstream 259203 1052591 ~ 1107558 (+) True XLOC_001792
TCONS_00003592 mRNA downstream 603552 1396940 ~ 1414161 (+) True XLOC_001793
TCONS_00003593 mRNA downstream 797216 1590604 ~ 1591103 (+) True XLOC_001795
TCONS_00003596 mRNA downstream 845488 1638876 ~ 1675351 (+) False XLOC_001796
TCONS_00003595 mRNA downstream 845488 1638876 ~ 1675351 (+) False XLOC_001796
TCONS_00003583 other upstream 278482 506563 ~ 507256 (+) True XLOC_001784
TCONS_00003569 other upstream 573791 211782 ~ 211947 (+) True XLOC_001770
TCONS_00003590 other downstream 11856 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003597 other downstream 871534 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003605 other downstream 1382195 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003616 other downstream 1895177 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003633 other downstream 2191656 2985044 ~ 3026523 (+) True XLOC_001822

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000203_00612664_00618559.mRNA True 946 mRNA 0.54 4 CI01000203 612573 ~ 618832 (-)