RNA id: TCONS_00005667


Basic Information

Item Value
RNA id TCONS_00005667
length 4854
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id XLOC_001791
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 859355 ~ 937042 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gggagaggcGGCCcgctctgatgacacgtacagaatgggaaatgtcaatcaaagtgtttttgcagactgtttttataaacatgattataaaaatacaataaataaatgtttaacatttgaagctgcttatattcacagttcacacactgctgacacaacTGTTTAAGCCTCTCTTTTTTGCACAAGAGGTCGCCTTTAATGTTATGCTGTACAAATAAAAAGCACATTTGATGACACAGCCAATCACTGTCCATCTGGTGAAGGTAAACCTTTTTTCCGATTGCAGGCTCCTGATTGGCTGGAGCTCCGATGGTTGGCTCGGGGACGCGCGCGCCTCTTCAACTCTCCATCAGAAGGCGAGGAGCTCGCGCTGGAGCAACTtccccgacacacacacacatgcacacacactcactcactcacacacggAGACCCTGAGCATGAGCTCACCTCAGGAGAGCTGATTTACCTGAGATTTACCTGATTTAACTGAGACTGACGGAGAAACTGAGGATATTAACCCAATCTGTGCTGTTTTGACGGGCGTTGTCAGTCAGAAgaggaaaatatatttataaaaagcttCCGGCAATATTTCACTCCGTTTCTCTTCAACAACAGCGCTTTATTTGGCTGTTTCCTACTACAGACATCATCTCCAGAAGCTCTGCCGGTCATTTCACCCGGATTTCAGCGTGATTTGGTTATGATGTGTTGGAGAAGTGGAGAGACTGCGAGCGGATCGGGATTGTTAGCGCGGATGATGATGATTTCTGTGCGGGTTTTTACTCTTTTATCGCTCATCATAAGCTCCGCTGCGGCTCAAGGCCGCGTTCCACCGCTGCTTGTACGAAAAGGGTCCAGAGGGATGACGAGCTGGagagggaaaaagagagagacagtTCCAGTGAACTTTTCTTATCTTTTGCCCTTTAAAATAACCACAGAAGAGACATTTGACACAAAGCAGGGACTTTATTTTTCCACTGTACTGATGTTCAAGCATATATTGAcattaattattgtttcaaagtagatttacaaaacattaatgcacattattgcattacaatcaaataagGGAAAGGTTATTAGTTACTATTAATTCACTTTAAACTAAGAGATTTTAAACagtaaatgttcattcattcaagtaTTTTCTTTCGCCATATTTCCTGATTTattaggagttgccacagcagaatgaaccgccaactattcaagcatatacagctgatgcccttccacacccatgcacactcattcactacggccaatttagctcatcaattcccctatagcgcatgtgtttggacttgtgggggaaaccggtgctcCCGGAGatcccaacacggggagaacatgcaaactccacacagatatgccaactggcccagccgggactcgaaccagtgaccttcttgctatgaagcgacagtgctaaccattgagccaccattcCGCTCATAGTAAaggttattatatataaacacagttaaCATGCAGTTACATATTTACTATATAGGTGATGTCTTCAAAGTAGATTTACAAAACATtaatgcacattattgcattacaatcaaataagGGAAAGGTAAGGTTATTAGTTAAAGTGAATTTACTATTAGCTGAGAGCTTTTAAACagtaaatgttcattcattcaagtattttctttcggtttagtccctgatttattaggggttgccacagcagaataaactgccaattatTCAAGCATATACAGCTGAtgccctgggaaacacccatgcacactcattagcccctttcacacatacagacctttccggaaaattaccggcaattttccggaaaggttgtatgtgtgaacaggtcctttttgataataccagtaaattcgttctggctattttccggaaagagaagttgtaacattaccggcaatttgccggaatgctgcgctgtgtgaatgcagaaggaagattcccgtaataagcgcgtgcacgtctagaacgtgctgacgtgagacgtctgcttaagccaatcacaacagtcagacgcatttacgtccgcgcggtttatgagaataaaagcctttgaatatttttccagacacatttagctgctagaagttagtcagatcacatttatatgttcttctttatgccaactgtgtaaataatcatcgatgagatgcttatgataagccgttgtttgtttaccttcaagctttgcgtgtgcctgtgaacagcctgtgagcgcctgcacacgcacatattatgaacatctcgacatgcgaaagtgatcctgcgaaagttgttcccaatattgatcatccacagagtttgtaatttagtcaaatgtttacaaacacaagcgcagccgtttaaagctcatttgtggtgaatgatgtcagaatttaccggtattttggaatggatgtgtgaatgctcttttccggaaaatttccgtaacgtcctcgcctgtgtgaacagcgcttttttgaacataccggtaaagtcgttccggaaattttccagatatttaccggtatcactgtgtgaaaggggctattcacacactcatacactatggctaatttagttcattaattcccctatagcgcatgtgtttgggaaaACCGGTGCTCCCGGAGATctcccatgccaacacggggagaacatgcaaattcgaCCTCCTTTAGTTGACTTTTCCATCATGGTTACTACCAGATGAGCTGAggtttgagatcttaaagagcgggttggattgtagtgagacagaagaTTGGTGAGATAAACGGGAGCGAGACTATTTAGTCTTATTATACATTGGActagaaagaaaacaaacaaacattgcaGTGTATCTCTTCAACATGCTCCTGCAGTTATGCGATGCATTGTGCGTATGCTTTAATAAAAAGATTGggctttaatctagttttgaagcctcagacattatcaggaaggctattccattatttaggagccatatatgagaaggcttgacctcctttagtggacttttctATCATAGGTACTACCAGACGACCTGAGTTttaagatcttaaagagcgggttggattgtagcgagacagaaggttggttagataaacaggagctaaacAATTAAGTCTTATTAAACATTGGACTAgaaagaaaacaagacaaaaacttgatgaaaaatacaaaaacattgcAGTGGATCTCTTTAACATGCTCCTGCAGTTCTGTGATGCATCGTGTGTAtgctttaatgaaaatataggtctttaatctagttttgaatcctcagacattatcaggaaggcaaTTCCATTATTTATTAGCCATATATGAGAAGgttcgacctcctttagtggacttttctGTTCTGGTTACTACAAGACgacctgagttttgagatcttaaaagagcaggttggattgtagcgagacagaaagTTGGTTTGATAAACAGGAGCGAGACTAGTTGAAGCTTTATAGGTAAAAAGCAATGTTTTATAATCAATAgggaacttaacaggcagccatgTTAGgcctcttgattttttttgttgttgttctataAGCGAAACCTCTGGAAAACAAAACCCGAAAAAGAAGCGGGAACAAAACGAGCCAAGTTGGTGCATCTAGAGTCTCTTAAAACTCACTATGTCATGAAATAATTGTGGGAAGACTTACAGTGTATTTATAAAACCGCTTCCTGGAAGCAACCGGGAGACAAATGCTGCAACGCTCCAGAGTGCTCTCATAAAAAGACAACGGGCCCAGGACAGAACCCCTGCTGTCTTATGAAACGCACTGTAGACACGCTTGCCTGCTTACAAAACCAAGAGAGCTACCTTTTTTAGACAGCATTTTAAGGTGTCATGCTGGCTGTTTTCACATTAATTATGATGCCTTTTCGGATATCTCTTGTTTTCTGCCAAGCTCTTAGTCAGCACTCACAAAATGCAGAGCTCAgtgaaaagataaaaaaataaagcagacaTGGCAGATGCTTCTCATAATGActtttactaattaaaaatattaaacttcTTTCCAATAATTGTTTGTGcctgtacttatttatttattttaaactttgcaGCATACTGTAATCATCCAACCGTCTCAATGCAAagtattaaaaaacacatttttgtgcattttaacgatttaaagggatagttcactcaaaaaaatgaatgtttactTACTATTTACGCACTGTCAAGGGCTTATAAACCTtcatgggtttctttcttctgtttttttagaAGTTTTagagctgaaaacctgcaacaattgacaaatatggaagtcaatggttgcagattTCCAGCatccatcaaaatatcttctttttcaaCAGAACAAATACGTTTAAGGGGTCATGAAATCCTAAAACACAAAGTTTTTTTGAGATGCTGACAGAAATATACACtctttggccactttattaggtacaccttactagtactgggctgGACCCcctccttcagaactgccttaatcctttgtggcggagattcaacaagctactggaaattttcctcagagattttgctccatattggcatgatagcatcacacagttgctgcagatttgtcggctgcacatccatgatgccaatctcccgttccaccacatccctaaagtgctctattggattgagctctggtgactgtggaggccatttgagtacagtgaactcatcgtcatgttcaccagtctgagatgattgagctttatgacatgctgcgttatcctgctggaagtagccatcagaagatggagacactgtgctcataaagggatggacatggtcagcagcaatactcgggtaggctgtggcgttgatgctcaattggtactaatgga

Function

GO:

id name namespace
GO:0048863 stem cell differentiation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0098588 bounding membrane of organelle cellular_component
GO:0012505 endomembrane system cellular_component
GO:0031090 organelle membrane cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005799 lncRNA upstream 86192 733804 ~ 796894 (+) False XLOC_001789
TCONS_00005666 lncRNA upstream 86845 790225 ~ 796241 (+) True XLOC_001789
TCONS_00005665 lncRNA upstream 89698 785738 ~ 793388 (+) False XLOC_001789
TCONS_00005798 lncRNA upstream 89777 733787 ~ 793309 (+) False XLOC_001789
TCONS_00005800 lncRNA upstream 89777 777341 ~ 793309 (+) False XLOC_001789
TCONS_00005803 lncRNA downstream 601257 1538299 ~ 1540732 (+) True XLOC_001794
TCONS_00005668 lncRNA downstream 761023 1698065 ~ 1713235 (+) True XLOC_001799
TCONS_00005804 lncRNA downstream 766863 1703905 ~ 1712770 (+) False XLOC_001800
TCONS_00005805 lncRNA downstream 771073 1708115 ~ 1712770 (+) True XLOC_001800
TCONS_00005806 lncRNA downstream 967313 1904355 ~ 1921020 (+) True XLOC_001803
TCONS_00003589 mRNA upstream 291239 589501 ~ 591847 (+) False XLOC_001788
TCONS_00003586 mRNA upstream 293003 573667 ~ 590083 (+) False XLOC_001788
TCONS_00003588 mRNA upstream 293426 585719 ~ 589660 (+) False XLOC_001788
TCONS_00003587 mRNA upstream 293658 575929 ~ 589428 (+) False XLOC_001788
TCONS_00003585 mRNA upstream 316479 563252 ~ 566607 (+) True XLOC_001787
TCONS_00003591 mRNA downstream 115549 1052591 ~ 1107558 (+) True XLOC_001792
TCONS_00003592 mRNA downstream 459898 1396940 ~ 1414161 (+) True XLOC_001793
TCONS_00003593 mRNA downstream 653562 1590604 ~ 1591103 (+) True XLOC_001795
TCONS_00003596 mRNA downstream 701834 1638876 ~ 1675351 (+) False XLOC_001796
TCONS_00003595 mRNA downstream 701834 1638876 ~ 1675351 (+) False XLOC_001796
TCONS_00003590 other upstream 77727 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003583 other upstream 375830 506563 ~ 507256 (+) True XLOC_001784
TCONS_00003569 other upstream 671139 211782 ~ 211947 (+) True XLOC_001770
TCONS_00003597 other downstream 727880 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003605 other downstream 1238541 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003616 other downstream 1751523 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003633 other downstream 2048002 2985044 ~ 3026523 (+) True XLOC_001822
TCONS_00003646 other downstream 2471741 3408783 ~ 3408900 (+) True XLOC_001830

Expression Profile

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