RNA id: TU820769


Basic Information

Item Value
RNA id TU820769
length 1583
RNA type TUCP
GC content 0.47
exon number 1
gene id G722459
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 53495804 ~ 53499730 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taattcatttgcattttattgcatgacataagtatttgatcacctaccaaccagtaagaattccggctctcacagacctgttcgtttttctttaaatagccctcctgttctccactcattacctgtattaactgcacctgtttgtaCTCGTTCCCCTGTATAAAAAGACACCTGTTGTTAaggttttcttctgttgaaggagaggcggaccaaaacgcagcgtggttattttgatacatctttaataaagatgacaatagaacaatatacaaaaacaagaaacgtgaaaaaccgaaaacagccctatctggtgtaacaaacacaaagacaggaacaatcacccacaaaacccaacaccaagctacctaaatatggttcccaatcagagacaatgactaacacctgcctctgattgagaaccatatcaggccaaacacagaaacagacaaactagacacacaacatagaatgcccactcagatcacaccctgaccaaacaaaacatagaaacatacaaagcaaactatggtcagggtgtgacacctgtccacatactcaatcaaacagactccaacctctccacaatggccaagaccagagagctgtgtaaggacatcagggataaaattgtagatctgcacaaggctgggatgggctacaggacaataggcaagcagcttggtgagacgGCAACAACTGTtgccgcaattattagaaaatggaagaaaatggttcaagatgacagtcaatcaccctcggtctggagctccatgcaagatctcacctcgtggggcatcaatgatcatgaggaaggtgagggatcagcccagaactacacggcaggacctggtcaatgacctgaagagagctgggaccacagtctcaaagaaaaccattagtaacacactacaccgtcatggattaaaatcctgcagcgcacgcaaggtccccctgctcaagccagcgcatttccaggcccgtctgaagtttgccaatgaccatctggatgatccagaggaggaatgggagaaggtcatgtggtctgatgagacaaaaatagagctttttggtctaaactccactcgctgtgtttggaggaagaaggatgagtacaaccccaagaacaccatcccaaccgtgaagcatgtaggtggaaacatcattctttggggatgcttttctgcaaaggggaccgGACGACTGCAccttattgaggggaggatggatggggccatgtatcgcaagatcttggccaacaacctccttccctcagtaagagcattgaagatgggtcgtggctgggtcttccagcatgacaacgacccgaaacacacagccagggcaactaaggagtggctccgtaagaagcatctcaaggtcctggagtggcctagccagtctccagacctgaacccaatagaaaatctttggaaggagctgaaagtctgtattgcccagcgacagccccgaaacctgaaggatctggagaaggtctgtatggaggagtgggccaaaatccctgctgcagtgtgtgcaaacctggtcaagaactacaggaaacgtatgatctctgtaattgcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU820770 lncRNA downstream 721 53495804 ~ 53497427 (-) False G722459
TU820062 lncRNA downstream 17023 53480893 ~ 53481125 (-) True G721825
TU820041 lncRNA downstream 20665 53463800 ~ 53477483 (-) True LOC110529122
TU820028 lncRNA downstream 35296 53462423 ~ 53462852 (-) False LOC110529122
TU820019 lncRNA downstream 40122 53457822 ~ 53458026 (-) True G721782
TU820773 lncRNA upstream 27866 53527596 ~ 53533919 (-) True LOC118965526
TU820801 lncRNA upstream 95826 53595556 ~ 53595773 (-) True G722488
TU820815 lncRNA upstream 136119 53635849 ~ 53709367 (-) True LOC110530114
TU820840 lncRNA upstream 178195 53677925 ~ 53679995 (-) True G722523
TU820885 lncRNA upstream 325294 53825024 ~ 53828481 (-) True LOC110530934
XM_021611263.2 mRNA downstream 19235 53462034 ~ 53478913 (-) False LOC110529122
XM_036985658.1 mRNA downstream 19235 53462034 ~ 53478913 (-) False LOC110529122
XM_036985657.1 mRNA downstream 137903 53342603 ~ 53360245 (-) True nsun4
XM_036985654.1 mRNA downstream 239633 53255197 ~ 53258515 (-) True LOC110530106
XM_021612923.2 mRNA downstream 240318 53255197 ~ 53257830 (-) False LOC110530106
XM_021612937.2 mRNA upstream 726 53500456 ~ 53569137 (-) False LOC110530111
XM_021612934.2 mRNA upstream 726 53500456 ~ 53569139 (-) False LOC110530111
XM_021612935.2 mRNA upstream 726 53500456 ~ 53585618 (-) False LOC110530111
XM_021612938.2 mRNA upstream 726 53500456 ~ 53585618 (-) False LOC110530111
XM_021612931.2 mRNA upstream 726 53500456 ~ 53585620 (-) False LOC110530111
TU820029 other downstream 34384 53463182 ~ 53463764 (-) False LOC110529122
TU819491 other downstream 736697 52761039 ~ 52761451 (-) True G721275
TU817704 other downstream 2239129 51252355 ~ 51259019 (-) True LOC110530043
TU817090 other downstream 2558677 50936928 ~ 50939471 (-) True G719151
TU816422 other downstream 3608896 49866630 ~ 49889252 (-) False LOC110530011
TU820950 other upstream 303713 53803443 ~ 53856065 (-) True G722602
TU821019 other upstream 426498 53926228 ~ 53927959 (-) True G722670
TU821119 other upstream 624649 54124379 ~ 54139341 (-) True G722761
TU821220 other upstream 751384 54251114 ~ 54251546 (-) True G722854
TU821231 other upstream 781955 54281685 ~ 54281978 (-) True G722864

Expression Profile