RNA id: TCONS_00005803


Basic Information

Item Value
RNA id TCONS_00005803
length 840
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id XLOC_001794
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 1538299 ~ 1540732 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGGCGGCCATGACTTCAGCTGTAGAGGAGAGTGCAGATGATGAACTGATCTCAGCTCAGGTGAAGACAGAAGCTCCTGGTCTCCTCTCTGTGGATCTGCCGTCGCTCCAGAATGATGAGCTGAAGGACAGAAACTCCTCACTTCTCACacatccagcaaacacacaaacacagagagagcgCTTGTTTATTCTTCAggattttttcttcttcagtattTTATACGTTTTTGCTCCTGAAGTTTTTACCTTCTTGTATGACTCTGAGAGAGCTGGACAGGGGTTTCTTCTCCACACTGGCCGTCAGTAAGGGACTGTGCGTCTCAATATGGTTCACCAGCTGAAGAAGAGGACAGGCAATCAAGCAGAAAACATCCATTCATGTGCTAATCAgcattaaaatgtgttgaaaatatttgtttaatacatttatttgataaataacaCATTTCTTCAACTATAGgcgatgtctatgtgtacatgttcagaGATGTGTACTAGTGTATGAACTCAGTTTTACGTCTCACCAGTCGGGTATTAGCAAACTCTCTGTCCATGTGGTCAGCGATGCTCTGCAGTCTGAGCAGCTGATTGTCCATCTCTGAGAGCCGTGCTGAGATCTGACTCCGGGACATCATTATCTGCTCCAGGGGGTCCCGGGAAGCCCGAACGTTGGTCATTACTTGCTCTAGGGAGTATCGGGGAGCTCGGATGCCAGCCAGGACACTCAGAGTCACGGGGTCTCCACTAAGAACAGCTTCAGGAGACGTGCACACTACTGAGGGCTCTATTGGAGAGCAAGACCAGGACACTACTGTTAGGACATTCTGACATCATTAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005667 lncRNA upstream 601257 883086 ~ 937042 (+) True XLOC_001791
TCONS_00005801 lncRNA upstream 648987 859355 ~ 889312 (+) False XLOC_001791
TCONS_00005802 lncRNA upstream 648987 877519 ~ 889312 (+) False XLOC_001791
TCONS_00005799 lncRNA upstream 741405 733804 ~ 796894 (+) False XLOC_001789
TCONS_00005666 lncRNA upstream 742058 790225 ~ 796241 (+) True XLOC_001789
TCONS_00005668 lncRNA downstream 157333 1698065 ~ 1713235 (+) True XLOC_001799
TCONS_00005804 lncRNA downstream 163173 1703905 ~ 1712770 (+) False XLOC_001800
TCONS_00005805 lncRNA downstream 167383 1708115 ~ 1712770 (+) True XLOC_001800
TCONS_00005806 lncRNA downstream 363623 1904355 ~ 1921020 (+) True XLOC_001803
TCONS_00005669 lncRNA downstream 426125 1966857 ~ 1991163 (+) False XLOC_001804
TCONS_00003592 mRNA upstream 124138 1396940 ~ 1414161 (+) True XLOC_001793
TCONS_00003591 mRNA upstream 430741 1052591 ~ 1107558 (+) True XLOC_001792
TCONS_00003589 mRNA upstream 946452 589501 ~ 591847 (+) False XLOC_001788
TCONS_00003586 mRNA upstream 948216 573667 ~ 590083 (+) False XLOC_001788
TCONS_00003588 mRNA upstream 948639 585719 ~ 589660 (+) False XLOC_001788
TCONS_00003593 mRNA downstream 49872 1590604 ~ 1591103 (+) True XLOC_001795
TCONS_00003596 mRNA downstream 98144 1638876 ~ 1675351 (+) False XLOC_001796
TCONS_00003595 mRNA downstream 98144 1638876 ~ 1675351 (+) False XLOC_001796
TCONS_00003594 mRNA downstream 98144 1638876 ~ 1675351 (+) False XLOC_001796
TCONS_00003598 mRNA downstream 127374 1668106 ~ 1675362 (+) True XLOC_001796
TCONS_00003590 other upstream 732940 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003583 other upstream 1031043 506563 ~ 507256 (+) True XLOC_001784
TCONS_00003569 other upstream 1326352 211782 ~ 211947 (+) True XLOC_001770
TCONS_00003597 other downstream 124190 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003605 other downstream 634851 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003616 other downstream 1147833 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003633 other downstream 1444312 2985044 ~ 3026523 (+) True XLOC_001822
TCONS_00003646 other downstream 1868051 3408783 ~ 3408900 (+) True XLOC_001830

Expression Profile

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