RNA id: TU821132


Basic Information

Item Value
RNA id TU821132
length 3085
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G722773
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 54204688 ~ 54207815 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGCCATTAATTTATTTCAAAATGCTGTTAGAGCGTATAAAGCAATGGATTTCACACCAACTTTCACCAGAAACCAGTTTGAGAAATATGAAATGAAGTTGTTCGAGGGCCACCAAGGTAAAAGACAGAACAAAACAATGTGAATTATCTATATGAATTACAATTGACCACCCGTGTGACGAAATCAACATTAGATGTCCCCTTTTCCATATACAGTATCAGGAAAAATGTGAGAGTATCATCATCTTAAGTGTTATTGAAGTCGAATTGGAAaagaaaatggaaaaaaaatgaATACAATTCAGTGACGTAAACAATGTACACGAACAAATTTGGGTGccagtgttttttttgtgtaacATTGAACAGTGTAGAAATGCAGAATGGTTATGTTCACAATCGTGGTCAGCTTAGCCATACTGTAAGAATCAGACAAATTCTCTAGCAAGCTAGACCATGGAAATATCTGACAAATTGAACATGTAGTTATTCAGTAAAAATGTCTAGTATGATTACACCGTAGCAAGATGCAGTATTTCCAACAAACGGACCACATTGACAATAATCAAGATCTGGGAAATACATTGTAAATTGAATTACTTATTTGATTATATCCTCAAGAAACACATGTTTCAAGTACTAATTAAGTAAACAATGTTGGGTAATAAAACAAGTAGATCAGTTTTAGATTTGACCTTGCGCTATCCTCTCTCGTTCAAGTATTAGTTGGTGCTAAATTATTATTTTAACCCTTGTCAATATTCCCACCGTGAAACACGTGTTCCTAACATCTGACAGAGTATGACAGTTCATCCTGATATTACAGCTTATTTGAAATAAGCGAGAGTGGAAGCATTTGTTAATTCCATAGTTGCAGAAGAAAACAATGTGCCAATGAGAGTATACAAAGTTCAGAGCAAAACCATCTTCAAATCTCTCACCAAACCACTGTCATTCTATCAAGTCTgctgttcaccccccccccccaagtcacTTTTTAATCATTTCCAACTGCCGTTTAGATTagttacggtgtgtgtgtgaatagcaTAGGCGAATCAGCAATACAACAAGACTGCTTCCATGtcaaaatatacacacacaaaaaacatttcAATTTGTCCCTCAGGGCTTCTGTTGGAATCCTGCCGTTTACCGTCATTGGTTGTAGTAATTTAACAGCAGATGGAAAAACTTCAAATACAGTAcacttgaccccaaaaaatgtaaacattCATATAACATGGTTAAAAACCGCAAAGAGAGCCAGTTCCTACATACACTGTACGATTCTTAAACCAGGGTTCTGAAAAATAACGAGAACTGCGTTAAGAGGAAATGCCTAACCTTTACAAACGCTCTCCTGCTAAATTAGATTGTAGGGTAGCTTGCTTCAACAAGCAGGTAAGTACGGCATTGCAGGATCGCCAACAATCTAGTATCAAAAAGGTAGTAAAGGCAGAACTTAATTTATTTTGTCAATCATTTTGTGATTTAAACCAATGAGAGAATTGGTGGAATCCATTTGATGATTTCACTGGATGATTGACAGGGCATGGCAGCAGGGCCCCATTCCTAAAGCCTCCTATGTACACTAcctcttctctttcttttttAGAAGGGTTCCTATGAGAAATCCCCGCTTTGGCATGGGGGCACCATTTCAAAGCATACCGAATGTAGATACCTTTCATACTTGTGCCCAGGTCTTTTAAAACGTGACACACTTTCCCTGATTCTCTTGGATCCAGTCCAGATAGTGACTACAAATCATTACCAAACACATTGTTCTAGTGTGTTAAAAGACAGCACTGAATTAAAAAGGGCTTGGACACAGTAAGTACATAAACATTCAACATGTGTTTGAAAGGCCATATTTGATCAGACAAAAATCAGCAGCCATTTTCCAAGAAATTAAACACTTTTGGAATACTAAAATGTTACCCAACTTAAAATTTAAGAGATAATGGACAAAGAAATTGCTTCATCCTCTGTCTCCATCTAGAAACCACATCTAAAACATTTGTTCTTAATTTAGTTTCCTCAAGTCCCTATCAATTCACACAACAGAATGGCTGCACCTCATTTGTGCGATTTACACAAATAGGGCCAATAATACATGACGTCATATTCAGCCctgaaataaaaacaaatgaaCATTAAAAAGTCATGAATAGGTTATTTcagttaaaaaaaagaaaaacaaatttAAAACATATTTACAAAGTACAAACATGTTACAGGTGCTACAGTGAACCTAAAACCAAAGGGTGAAGGAGGGGGAAACCAAAAATAGGATGTAAACCAATTTTGGCACTCAAAAGTTTGTTTAGTGTGGTAGGATGCATACTGTAACGTTAACTCGACTATGTAACAACATTATTTTTGTTCTTCTCTCCCTCCGGTTGCCTCGATTGGCACAACTTGAGTATATACTTGCGGATAAACATGCAAGCCCTTCAAATACTGTACAGTAGTCGATAAGAGTATGTAACCTTAGTCTAGAGTCTTGCTGTCTTGAGAAAGACTCTACCTTTCACCTTTTTGGAGCAACGCTAGGCtaaaacccctccctctcttttggTTTGGATTTCTGTGCTGCTGTACCCTGTGCTCCTCTCCCCGCAGCCTCCAGGCTCCAGTCGGACTGAGCCAAGTTAATCCACGATGCCTTAAACCGCGGCTGCCTGACGGGGAGGGTGGCTCTTGGCTCCTTCTCATTTGGGTCGTCAAAGCTCACCTCCTGCACCGCCTTCTGCTTCTTAAAGGAGTCCCTCCTCTCGGACAGGGCCAGTTTCCTCATCACCAACTCCTTGGAGCAGTGGTCACTGCGGTGGTCGCTGCTTGTCGACTCCCTGTGGATTCTCTGACCGCCCAGATACAGGCCCTGGCGGCCATGTTGTTCCCCCACACAGACAAACCCTCTGGCCGTATCCAGGTCCTctagcccctccccctccgaCAGAGGTACCTCCATGGTGTGTCGGCGGGTGGCGTAGCCCTTCTTGTCACCGTGGTACGCCCCGGAGAGCTTCTCAGCCGACTGCACCCTCTTGAGGAGGGGAGAGCGGGGCGGCTCGGCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU821173 lncRNA downstream 15474 54188069 ~ 54189214 (-) True G722812
TU821166 lncRNA downstream 19156 54180442 ~ 54185532 (-) True G722805
TU821086 lncRNA downstream 169966 54033291 ~ 54034722 (-) True G722728
TU821055 lncRNA downstream 239281 53965176 ~ 53965407 (-) True G722699
TU821045 lncRNA downstream 250259 53954197 ~ 53954429 (-) True G722696
TU821215 lncRNA upstream 39257 54247072 ~ 54247859 (-) True G722849
TU821219 lncRNA upstream 44330 54252145 ~ 54252842 (-) True G722853
TU821218 lncRNA upstream 46347 54254162 ~ 54254404 (-) True G722852
TU821227 lncRNA upstream 55924 54263739 ~ 54263859 (-) True G722860
TU821230 lncRNA upstream 64961 54272776 ~ 54273055 (-) True G722863
XM_021612960.2 mRNA downstream 72949 54127068 ~ 54131739 (-) True LOC110530126
XM_021612959.2 mRNA downstream 99278 54058122 ~ 54105410 (-) True LOC110530125
XM_021612953.2 mRNA downstream 165116 54024736 ~ 54039572 (-) True crsp7
XM_021612954.2 mRNA downstream 165117 54024736 ~ 54039571 (-) False crsp7
XM_036985681.1 mRNA downstream 190254 54008434 ~ 54014434 (-) True cnn2
XM_021612975.2 mRNA upstream 166418 54374233 ~ 54377574 (-) True LOC110530134
XM_021612981.2 mRNA upstream 235315 54443130 ~ 54445222 (-) True LOC110530139
XM_021612982.2 mRNA upstream 238404 54446219 ~ 54465716 (-) True LOC110530140
XM_036985695.1 mRNA upstream 270110 54477925 ~ 54485433 (-) False LOC110530141
XM_021612983.2 mRNA upstream 270110 54477925 ~ 54485771 (-) False LOC110530141
TU821119 other downstream 65347 54124379 ~ 54139341 (-) True G722761
TU821019 other downstream 276729 53926228 ~ 53927959 (-) True G722670
TU820950 other downstream 348623 53803443 ~ 53856065 (-) True G722602
TU820769 other downstream 704958 53498148 ~ 53499730 (-) True G722459
TU820029 other downstream 740924 53463182 ~ 53463764 (-) False LOC110529122
TU821220 other upstream 43299 54251114 ~ 54251546 (-) True G722854
TU821231 other upstream 73870 54281685 ~ 54281978 (-) True G722864
TU822417 other upstream 1169466 55377281 ~ 55377776 (-) True G723955
TU822429 other upstream 1188809 55396624 ~ 55396885 (-) True G723966
TU822777 other upstream 1427723 55635538 ~ 55646014 (-) True G724287

Expression Profile