RNA id: TU822267


Basic Information

Item Value
RNA id TU822267
length 1524
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G723814
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55139311 ~ 55140834 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgaccttaaattaatcattgtttattgtcagcacactggagaggttccaacaaacttgaTGCATCATAGTGAATGTCTGTCAGGAGCTCTAACGGGGCAGTCCCATTAGTTATCTTATATAATGCAGACAAGTCATATTTtcatgatttagcttattcataattaattcatcattaacatctgcttcattcatgtgaccgaccaatactgggtcatgcatgtgacagaccaatacctcacgaggcttcATTTccctaagctgagaccttgaaactgagatatctttcattctcaaaacaagggtctgattgtactgccaaattgcagatactgatagtGATGATTTGCTcagtcagtcacttgcatgaacacagaaattggtgaATAGAAAAGCCCCAACATAAAATGTTCCATCAcattacgaattgcaattcgtacaatatgttacgagttgaaaaaatgtacaatatgttaggaATTTGCTAAATGTATGATAGGTTtagaattccaatttgttgttgctaatgttagctaggtggctagtgCTAAcgtgggttatggttagggttaaggttaggagttaggttaaagggttacgtttagggttaggggaatggtgctaaagggttaaggttaggggaatggttagctaacatgctaagtagttgcaaagtagctaaaaagtagtaaggaGATGCAAAGTTACCCGTGATGAGTTTCGAACATGCAACCTACTATATGTTTGCGCTCTACGTCCACCCCAACAaaccaccctcctttcatttTTTCCtgaagtaaccatctgtcttatgtaaccataccaaatgtaacatatcatactaatttgagtgtcccaggtttacttttactatgttacatctagtctatgagaccaggccgCAAGTGCCTGGTTAATTAAATTGTGCTTAGGAGCATTTTTTAACTATCTCAATGGTTAAAGTAGGAAGAAATAGATGTCATTGTTGTACAAATGTGTGAGTGTGCTACATTTACTATCATCAAATTAAAATATTGAATTACTTTGACATATTTAATATATGGTGAGTAAGATGGCGCTGACAGAAAGGGCTGCCTCACTTCTAGTTCTTAGGAAACTTTACAGTATTTacttttttatgtattatttcttacattgttagcccagaaaatgttATGTGTTACATACAGCCGACCAAAAACAACGCTGGTGATGGACAGGTACTCGGAGCAATCTTCTAGTCCGACTTAGGAGGCACGCACaacacccaccgcttccgagtatattactcgctaatgttcagtccctggataataaagttgacgaaCTCAGGGCTAGggtttctttccagagagacatgtttccacgtggaaacatggctctctcacgATATACTGTCGGAGTCAGTCCAGCCATCTGGATTCTTAGTTCATCGCGCCGACAGGAATAAACTtttctccgggaagaagaagggtggggATGTATGTTTTTGATTAgcaactcatggtgtaattgtgataacatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU822252 lncRNA downstream 22264 55116822 ~ 55117047 (-) True G723801
TU822249 lncRNA downstream 31329 55107464 ~ 55107982 (-) True G723798
TU822248 lncRNA downstream 32425 55106643 ~ 55106886 (-) True G723797
TU822227 lncRNA downstream 33279 55102967 ~ 55106032 (-) True G723780
TU822235 lncRNA downstream 49633 55085974 ~ 55089678 (-) True LOC110530150
TU822296 lncRNA upstream 44793 55185627 ~ 55186127 (-) True G723843
TU822297 lncRNA upstream 45727 55186561 ~ 55186880 (-) True G723844
TU822310 lncRNA upstream 77262 55218096 ~ 55220955 (-) True LOC110530159
TU822347 lncRNA upstream 116828 55257662 ~ 55273903 (-) True G723891
TU822418 lncRNA upstream 237256 55378090 ~ 55378339 (-) True G723956
XM_021613000.2 mRNA downstream 49591 55085968 ~ 55089720 (-) False LOC110530150
XM_036985707.1 mRNA downstream 54794 55074480 ~ 55084517 (-) True LOC110530149
XM_021612999.2 mRNA downstream 54936 55074480 ~ 55084375 (-) False LOC110530149
XM_036985706.1 mRNA downstream 54946 55074480 ~ 55084365 (-) False LOC110530149
XM_036985712.1 mRNA upstream 13844 55154678 ~ 55162613 (-) False LOC110530155
XM_021613003.2 mRNA upstream 13844 55154678 ~ 55180780 (-) True LOC110530155
XM_021613007.2 mRNA upstream 62849 55203683 ~ 55209485 (-) False LOC110530157
XM_036985714.1 mRNA upstream 62849 55203683 ~ 55209504 (-) False LOC110530157
XM_021613006.2 mRNA upstream 62849 55203683 ~ 55210842 (-) False LOC110530157
TU821231 other downstream 857333 54281685 ~ 54281978 (-) True G722864
TU821220 other downstream 887765 54251114 ~ 54251546 (-) True G722854
TU821119 other downstream 999970 54124379 ~ 54139341 (-) True G722761
TU821019 other downstream 1211352 53926228 ~ 53927959 (-) True G722670
TU820950 other downstream 1283246 53803443 ~ 53856065 (-) True G722602
TU822417 other upstream 236447 55377281 ~ 55377776 (-) True G723955
TU822429 other upstream 255790 55396624 ~ 55396885 (-) True G723966
TU822777 other upstream 494704 55635538 ~ 55646014 (-) True G724287
TU822909 other upstream 644683 55785517 ~ 55791485 (-) True G724400
TU823541 other upstream 979369 56120203 ~ 56128288 (-) False G724943

Expression Profile