RNA id: TU822434


Basic Information

Item Value
RNA id TU822434
length 573
lncRNA type antisense_over
GC content 0.61
exon number 1
gene id G723971
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55405307 ~ 55405879 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTAGTCCTCTTCCTCCTTCGCGTCCTCCTGACTTTGCCCCCCTCCTCCAGCTCATCAGCCCCGCTGCTCTCAGCCTCCGTCCCCTCAGGGTTAAAGTTCACGTCGAAGATGCCCGGGCGGGATGACCGACGTGAAGAGGGGGTGCACCGGTGCTCCACAGGCACCTTTCTCTTCAGGATGGCGAGCAGAGGCTTCTGGGGCTTCGGCCCTTGACCTCGAATCGGATCTTCTCCTACCTCAGATTCAGAGTTGAGGGTGTCCGTGCTGGCGTGGTGTTCCAGCAAGGGTGAGGGGAGGCTGTGCTGCTGGTCGTCAGAGGCCTGAGAATCTGGTGCCTCTGACCCTTGGTTGTTGTTGGCGTTTGTCATTTTCCTGCGTATCTCCAGCAGGGCGGCGCCCCaggccccctctcccccctcggCGTCGTCTGAGCCCATCTCATCGTAGGCGGAGATCACACCGGACTCCTTCTCCAAAACGCTGAATACCAGTGACTTCCTCTTGGTCAGGAGGCTGGGCCGAGACAGCTGTGTGCTCTGCTGGGCGATCCAGTTCCCGTCTGGGCTCTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU822433 lncRNA downstream 365 55404544 ~ 55404942 (-) True G723970
TU822432 lncRNA downstream 2257 55402612 ~ 55403050 (-) True G723969
TU822430 lncRNA downstream 5794 55399049 ~ 55399513 (-) True G723967
TU822418 lncRNA downstream 26968 55378090 ~ 55378339 (-) True G723956
TU822347 lncRNA downstream 131404 55257662 ~ 55273903 (-) True G723891
TU822449 lncRNA upstream 17175 55423054 ~ 55470008 (-) True G723979
TU822491 lncRNA upstream 93587 55499466 ~ 55499860 (-) True G724020
TU822513 lncRNA upstream 104459 55510338 ~ 55510564 (-) True G724042
TU822733 lncRNA upstream 139855 55545734 ~ 55545995 (-) True G724245
TU822734 lncRNA upstream 140968 55546847 ~ 55547117 (-) True G724246
XM_021613014.2 mRNA downstream 67709 55335612 ~ 55337598 (-) True LOC110530163
XM_021613016.2 mRNA downstream 67720 55335612 ~ 55337587 (-) False LOC110530163
XM_021613011.2 mRNA downstream 91703 55304680 ~ 55313604 (-) True LOC110530161
XR_005052911.1 mRNA downstream 181979 55217971 ~ 55223328 (-) False LOC110530159
XR_005052912.1 mRNA downstream 190574 55211750 ~ 55214733 (-) True LOC118965529
XM_036985719.1 mRNA upstream 17787 55423666 ~ 55456049 (-) False si:ch211-106h4.4
XM_036985720.1 mRNA upstream 21845 55427724 ~ 55456052 (-) True si:ch211-106h4.4
XM_036985721.1 mRNA upstream 55317 55461196 ~ 55468070 (-) True LOC110530166
XM_021613024.2 mRNA upstream 127737 55533616 ~ 55544134 (-) False odr4
XM_021613026.2 mRNA upstream 127741 55533620 ~ 55543988 (-) False odr4
TU822429 other downstream 8422 55396624 ~ 55396885 (-) True G723966
TU822417 other downstream 27531 55377281 ~ 55377776 (-) True G723955
TU821231 other downstream 1123329 54281685 ~ 54281978 (-) True G722864
TU821220 other downstream 1153761 54251114 ~ 54251546 (-) True G722854
TU821119 other downstream 1265966 54124379 ~ 54139341 (-) True G722761
TU822777 other upstream 229659 55635538 ~ 55646014 (-) True G724287
TU822909 other upstream 379638 55785517 ~ 55791485 (-) True G724400
TU823541 other upstream 714324 56120203 ~ 56128288 (-) False G724943
TU823623 other upstream 813637 56219516 ~ 56232939 (-) True G725007
TU823714 other upstream 968774 56374653 ~ 56386516 (-) False LOC110530186

Expression Profile