RNA id: TU822762


Basic Information

Item Value
RNA id TU822762
length 1099
lncRNA type intronic
GC content 0.40
exon number 2
gene id G724272
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55588488 ~ 55589616 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagcgggatcattttcatcaacacccgctgaattgtagcgcgccaaattcaaattaaattactaaaaatatttaattttcatgaaatgaaagtgcaatatagcaaaacacagcttagcttgttgttaatccacctggcgtgtcagatttcaatacagcttttcggcgaaagcataacaagcgtttatgtaagaacatctctctcagtagacaaatattacaaacactagcagccaagtagattggtcacgaaagtcagaaaagcaatagattaaatcgcttacctttgatgatcttcggatgtttgcactcacgagactcccagttacacactaaatgttccttttgttccataaagattatttttatatccaaaatacctccatttgtttggcgcgttatgttcagaaatccacagtctcgagcggtcacgacatcgcagacgaaaattccaaatagtatccgtaatgtccacagaaacatgtcaaaccttttttataatcaaccctcgggttgtttttaaaatatataatcgataatatatcaaccgggactgtcgctttttcaataggagagggagagacaatggctgccccactctgttgcgcaagcaaaactctgcgaacacccagctatccactgacacgatgttatctttctctctcatttttctaaataaaagcctgaaacgatgtctaaagactgttgacacctggGGGAAGCCATAGGacaaggaatctggttgatatcccagagctttcaggaaaaacatcacttcctggtttgattttcctcaggttttcgcctgcaatatcagttctgttatactcacagacaatattttgaccgttttggaaactttagagtgttttctatcctaatctgacgaTTTcttgcatattctagtttctgggcctgagaaataggcagtttcaaatgggtatgtttttttttacccaaaaacgaaaatcctgccccctacactcaagaagttaacggtcaattaccatgagaccggcagttatttgcttgacaatcaccggctgacaaagtttcatgaccgccacagccctaactTCCCTCTAGGGTCCCTGTAACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU822754 lncRNA downstream 12801 55575059 ~ 55575687 (-) True G724264
TU822734 lncRNA downstream 41371 55546847 ~ 55547117 (-) True G724246
TU822733 lncRNA downstream 42493 55545734 ~ 55545995 (-) True G724245
TU822513 lncRNA downstream 77924 55510338 ~ 55510564 (-) True G724042
TU822491 lncRNA downstream 88628 55499466 ~ 55499860 (-) True G724020
TU822856 lncRNA upstream 128248 55717864 ~ 55718713 (-) True G724366
TU822860 lncRNA upstream 131468 55721084 ~ 55721324 (-) True G724370
TU822861 lncRNA upstream 132487 55722103 ~ 55722418 (-) True G724371
TU822862 lncRNA upstream 133361 55722977 ~ 55723486 (-) True G724372
TU822863 lncRNA upstream 134401 55724017 ~ 55724208 (-) True G724373
XM_036986877.1 mRNA downstream 24389 55555878 ~ 55564099 (-) True LOC118965626
XM_021613024.2 mRNA downstream 44354 55533616 ~ 55544134 (-) False odr4
XM_021613025.2 mRNA downstream 44382 55533620 ~ 55544106 (-) True odr4
XM_021613026.2 mRNA downstream 44500 55533620 ~ 55543988 (-) False odr4
XM_036985721.1 mRNA downstream 120418 55461196 ~ 55468070 (-) True LOC110530166
XM_036985723.1 mRNA upstream 94009 55683625 ~ 55688982 (-) False LOC110530171
XM_036985724.1 mRNA upstream 94009 55683625 ~ 55688982 (-) False LOC110530171
XM_036985726.1 mRNA upstream 94009 55683625 ~ 55688983 (-) False LOC110530171
XM_036985725.1 mRNA upstream 94009 55683625 ~ 55688984 (-) True LOC110530171
XM_036985738.1 mRNA upstream 140818 55730434 ~ 55763921 (-) False LOC110530174
TU822429 other downstream 191603 55396624 ~ 55396885 (-) True G723966
TU822417 other downstream 210712 55377281 ~ 55377776 (-) True G723955
TU821231 other downstream 1306510 54281685 ~ 54281978 (-) True G722864
TU821220 other downstream 1336942 54251114 ~ 54251546 (-) True G722854
TU821119 other downstream 1449147 54124379 ~ 54139341 (-) True G722761
TU822777 other upstream 45922 55635538 ~ 55646014 (-) True G724287
TU822909 other upstream 195901 55785517 ~ 55791485 (-) True G724400
TU823541 other upstream 530587 56120203 ~ 56128288 (-) False G724943
TU823623 other upstream 629900 56219516 ~ 56232939 (-) True G725007
TU823714 other upstream 785037 56374653 ~ 56386516 (-) False LOC110530186

Expression Profile