RNA id: TU822856


Basic Information

Item Value
RNA id TU822856
length 727
lncRNA type antisense_over
GC content 0.52
exon number 2
gene id G724366
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55717864 ~ 55718713 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTACATTTGGAAGTCAAAACTCTCTGTAAAATAGTCAAGTGGATACACAGCCCAGATATCAACTTCATACTCAACACTCACTGTAGTTAGCAGGTGCAGGATGTCCCTGGTCTCCTAGCTTATTCTCCAGGTTGTTGTGGTGGATCTCACTGGCCGGTCTGAACACCAGCATGGCTGGTGGTTGACTGAGGTTGAGAGGAGCCTGTAGTTCCCACACAAGACCTTCATGGTCATGATCCAGGTCATGGTCGACCTCCGGGGGGTTGTCCGGGACCCGAACACCACTGTGGTTTCCCAGCTTCCCATAGTCCTCGCTGGCCTCAATCTCATTGTCATTCAAGGAGAGTTCAGTGGCAGTGGCGTTGGCCATTGTTTCTTGGGCCACCGGGGGCCATGATTCTGGGGCCGCAGGTTCGACAACGGACAGTGCTCGTATCTGGACCTCCTCTGGAGGCGAGGCTACTGGGGTTGTTGCGCGGGCTTCTGGGGTGCGAGGTACGGTGTACTCGTATGTGATGTGGGGCATCTTTCCGTTCAGGTTGTAGTACTTGTCATGACGTTTAGCCCCTGGTCAGTGGGTCCTTGGGCGATGATGTACTCAAATCCATCTGATAAGAGGTTAGCGGGTCTCCTGTACTTGAAGACTGTGCCAGCAACACGGAAGTTACGGGGATTGTCGATAATTGTGTTCCCATTGAAAAAGAAGTGTCCTGCTTCATCGGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU822762 lncRNA downstream 128248 55588488 ~ 55589616 (-) True G724272
TU822754 lncRNA downstream 142177 55575059 ~ 55575687 (-) True G724264
TU822734 lncRNA downstream 170747 55546847 ~ 55547117 (-) True G724246
TU822733 lncRNA downstream 171869 55545734 ~ 55545995 (-) True G724245
TU822513 lncRNA downstream 207300 55510338 ~ 55510564 (-) True G724042
TU822860 lncRNA upstream 2371 55721084 ~ 55721324 (-) True G724370
TU822861 lncRNA upstream 3390 55722103 ~ 55722418 (-) True G724371
TU822862 lncRNA upstream 4264 55722977 ~ 55723486 (-) True G724372
TU822863 lncRNA upstream 5304 55724017 ~ 55724208 (-) True G724373
TU822907 lncRNA upstream 45610 55764323 ~ 55764554 (-) True G724398
XM_036985725.1 mRNA downstream 28880 55683625 ~ 55688984 (-) True LOC110530171
XM_036985726.1 mRNA downstream 28881 55683625 ~ 55688983 (-) False LOC110530171
XM_036985723.1 mRNA downstream 28882 55683625 ~ 55688982 (-) False LOC110530171
XM_036985724.1 mRNA downstream 28882 55683625 ~ 55688982 (-) False LOC110530171
XM_021613029.2 mRNA downstream 102930 55567843 ~ 55614934 (-) False LOC110530170
XM_036985738.1 mRNA upstream 11721 55730434 ~ 55763921 (-) False LOC110530174
XM_021613036.2 mRNA upstream 11721 55730434 ~ 55764053 (-) False LOC110530174
XM_021613037.2 mRNA upstream 11721 55730434 ~ 55764053 (-) True LOC110530174
XM_021613040.2 mRNA upstream 50713 55769426 ~ 55774173 (-) False LOC110530175
XM_021613039.2 mRNA upstream 51635 55770348 ~ 55774173 (-) True LOC110530175
TU822777 other downstream 71850 55635538 ~ 55646014 (-) True G724287
TU822429 other downstream 320979 55396624 ~ 55396885 (-) True G723966
TU822417 other downstream 340088 55377281 ~ 55377776 (-) True G723955
TU821231 other downstream 1435886 54281685 ~ 54281978 (-) True G722864
TU821220 other downstream 1466318 54251114 ~ 54251546 (-) True G722854
TU822909 other upstream 66804 55785517 ~ 55791485 (-) True G724400
TU823541 other upstream 401490 56120203 ~ 56128288 (-) False G724943
TU823623 other upstream 500803 56219516 ~ 56232939 (-) True G725007
TU823714 other upstream 655940 56374653 ~ 56386516 (-) False LOC110530186
TU823713 other upstream 664416 56383129 ~ 56386516 (-) True LOC110530186

Expression Profile