RNA id: TU823540


Basic Information

Item Value
RNA id TU823540
length 5204
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G724943
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56120203 ~ 56128288 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agcttttcatttaaaaaaaaaaaaacattgccaaTGCCAATTTAACATGTTGAGAGTGAAGTGCGGTGGACAGCTGAAAAGGCTGTAATGTTTATGATTTAGGGCTTGATTCTGTAAAGTCTAACATGTTAGCCGAGCTCATTTGtgctatacaatacaatatactgtaATTACATTTCCAATTACAACCGCCAGCACAGGTCGCCACTGGGATAACCAATGACATTTTCACTGAAATTACCAGTGTTGCATTTATAGTCTGCAAAGGATTTGTCTAATCCAACATCTAGAGACCCTATTATTAATAATTAGACAAAATGCTTAGTGTTGGGAATTGCCGACATAATATAAGCATCTTATTAATATGGGTTTCTATGGAAACGAGATTGTTCTATTTATTAGAACAATCGCCATACGGCAGAGGGGAAAAGCATAAAAAATGTGAATTTGAAAATGGTTTTGAGCCTTGACTGAGGCTGGAGCTATGAGACGATAAGCAGAGGAAATGTGCAATATTTAACCGATTTAGGGCAGCAGCTGCTGGGTATGGTCTTTCTGATTCATGTCCCATTAAAGCTGATACTTCAGGCTGTTGATAGGCACTCCAAAATATTTCAATGAGGACTGAAGAGGGAAGCGTGACATTAAGAATGATTGGGATATGAATGTAACTACATCATCGGATCAGGGCTTTTTTTTCTCACTAAGTGACCTCTCCAGAAAAAACTTTGGGCCCTAGTTATTTTTCCTGGGCCTACAGTTCTTTCTGGGGTGGGTCACAGGGTCAGGAAAAATGTCTGGCCCTAGAGATGAACATGGAGCATAATGAAAAACAGTTTGTATAGAGGAAGGAAAGATGTCAGACTTACATCACAGCTCTTCTCTGGGTTTCTCTTCCAGTGTTTCCTTTCTGTCTTCTTGGCGCCCGTTGAGTGGATGGCAGCGTGGGTCTGCACCCTCGGGTTCAGAGACAGGATACTCTGTGGCACATTGAGCATGGCTCATTAACACAGGGCGGCTTATTGACCCAACACACTATTGTGAAATAGACAATTCGTGTCTGATTCACAATAAGCTGTGAGAGTGGGTTGCAACACCACAAAGGTCTCAGTCTTGAGTGGGTTTGAGAGTAGTACATGTGAGGAAATGCAGGTTATATTGGAAGAAACAGAGACGTAAAAAGGAGAGAGCATTGAGGCACATAGGAATTGTTTTAGGCCGAATCGTTAATGGTAAGAaggattttttgtgtgtgttttagtatAGCATATGTTTACCTTTAGGCTACATGTTTATATGGAGAGAAAATGTCAATTTCTAcactaaaaaaaaaatcataaagtaaatcattttaaaatgtagcctgtgacactttgcttcttgaaggtccaatatcttgaaaacttgactgctgacatgcaaaatattatgggactgtatcaacagtggactaatacaAAAATGCTCAAAGACAGTTCTTTAATCGATTTTCCCTTTAACACTGATTGTGCTAAAACACCATCGGATTGTAATATCAACCTGTATTAATTACACAACACATTCATCTAATCCATAATTCCCAAGCAGGCAAATGCACCGTGAAACAAGACCCACATTGAGGCTGAGTACTAGATTCTCATCCTGTGAGGTATCGTTCTCTGACACCCATTGCCCATTGATTCACGGTTGCCAGTCAAATGATCATGGTATGAGCAAGTCTTTCAAGATGGACACAAATGTAGAGCAGGGTCCTCTGTTCAGATGGCAAACACAATTAACAGCCAAGCtaactgagggagaggagggaagtggGGGGCATAAACAGAAAAGGAAACAGCTATCACTGGCACACTAATACTCATTTCATGCTCTTTGTAGGGTGAAGGGGAACCATGTCTGCATTAGTTTCAGTACACACGACTAGCACAATCAGATAAAGGGAAGAACAGAAAGGCCAAGCGCAAATTGAAATGAGCCACTTTTGGTCCTGGTGCTGAACTGAGACTTGAAGGCAGTTTGTGAGGCGGGTGCCAGCCGGATAATACCATTAAAGCTTGAAACACAAAGCAAGCAGATCCAAGATGTCATTCAACAGAGACCCGCATACCAATGAACTCGGATGAAAGCCCTACAGCTCTTAGTACGTTTATAAGTAGAGTGTAAATTGTGGTACGCTGTTATCAAATGTTTCAGAAATAACTTTTTTGTCTTGTCAATGTCTGAATGTTTTTCAGGTCatgacacacacaacaacaatgaAACGGGGCTGCTATCTGCAAGTTATTTTCTTTCTTAGGTTTCAGTGGGGGAATGAACAGGTCAGCCAAACCTGAAGCAACAAGTTGCACTTCAGTGAGAAACTGAAGTGAATCTATTATTAAAGCCACTATCAATGTATGTCAGGGACGTATAGAGAGTACACGCTGTATTCTGCCTATGGCACAGTGCCTGTTGTGTGGAAACAGTTGCATTATCTTGAGATGCGGGGCATTTGTTGTATTCTTTATCAGACTTTGCCTATGATTCAAGTTTCATTCATTTCTATAGTTAGGCTACACCctaaaaacaccagaaaatgaaCCAAGCACAGTTATGAAAATAGCTTTCATTAATATTATATGATATTGATAACAGCCCTCTATTTTATTAAAGAGTAAGAATACATTATCAAACAAATAATTTGGGGAAGTGTCTTGCTATGCCTTTAGGGTAGAGAAAACCATTCCCGCAGGAGGAATCCAGATACAATTTTAAACACAATTATATTCTCCTTTCCTCGCAGTCCCATGAGGAGCAGTGGAGGCTGACTTTATCAGTCTCCACTGATCACACCCGGCACCCACATCACTAATTCCACAGAGTCAGTAAAATCACAATCACACACTGCAGAAATTAGGAAGCGATGTCAGCCGTTTAGCAGTGGTATTTAAACTCTGGACTGCTGATGCTAATGTTTCGGCCATTGAGCGGCTTGAAGCCACCaatcggccatattggcactccatagtaggagcagtcctccataggaatgaatggaattctacagtatttcaaataaatgcttcaaggACAAAATCATaagtatttaagtatttttttgttattgtagtgggaacagtaacattaacattatctcagaatgccatttcgcaTCGATTGTATAATAATGCTAAAATATATGTATCTGGAActtgtctttcagcatcagtagaacacgcctgactctcctccaccagtcaaacccaagaagaatggtctaatgcctcccatcaaaaagagagctggcccatgcaagcaaaggcagcagcgcagtcatcaacGACAgtacatgcaccatttcttcaccaactaCGAAATTGGGGAAATACGTGTGCACCTGAATTGCGAGTGCACCTGAATTGCGATaactgcagtggccaaaacaataacaagtttgtgctctggtattgtgCCTGGCGGACAATGCACAAGCTCCACCGCAgtctggaccttcacttcctgatcacaggccacaccaagtttGCCCCCGACTGGTGCTTCGGCCTCATCAAGCAGCGCTTCAGAAAGAACAGAGTGAACActgtctgagattgctggtgttgtgaaggacagcactgtgacaggggtcaacatcccacagctggttggactggaggatggtacggtgctggtggaaagctacGGCTGGCAACAACACTCCGTACTTCAGGCCgctgccacagatcaagcagtaccagcacttcagctttgtaGCCTGGTGTTGTCGCCAAGGAGATTTCGGACTgtcgggaccaggtttcagctgctgcgcaacgctgacatccttcctcccatagatgacatccttcctcccatagtCTCCCATAGACCTGTACAAGCACGACCTGaactggacacagctagacaaacttatatttttgagaagatcagggagttttgcaactaagtcaagggcaggacagaaacaggctccccgaatatagattcccttgttcatTCGTGGTTCGGacggaccagtcatcagcactatctgcagtgcctctattcaaatgactctctcctaacacgTAAGTTGTTGCTACACTTTTTTTTgttatcctgctgctcagccactttacccctgatttTATGCATATACAGTAACTACATCGTCCATCACTGATAtcgttattgatattgttcttgtacatactgtatagttGATTTTGACGTGATCTATTTCTGATATTGCGattatgcaagtaaccatttggctgtacCGTTTAAACattctgtagagacccatccacttagcaagaCTTCTAAATATAAAATGAATATTGATATGTGTGGACGTAACATGATTTTGTGACATACCACAACAATATCAAGTGTCCACCACATAAATATATGGTGCATCCACATAAATATATGGTGAATCCACATAAATATATGGTGAATCCACATAAATATATGGTGAATCCACATAAATATATGGTGAATCCACATAAATATATGGTGCATCCACATAAATATATGGTGAATCCACATAAATATATGGTGAATCCACATAAATATATGGTGAATCCACATAAATATATGGTGCATCCACATAAATATATGGTGCATCCACATAAATATATGGTGCATCCACATAAATATATGGTGCATCCACATAAATATATGGTGAATCCACATAAATATATGGTGAATCCACATAAATATATGGTGCATCCACATAAATATATGGTGCATGCATTTGTTTATGTACACCTCACTCAGGTTTCAACTCAGGTTGCATGGCCTTAACTTATGTATGGAATACTATGTGATAAGTGCGTGTGTAACAGTATATAAAGTATACTAATGTACTGGTGTGAAGGCATTTGGGCAGCGGTCAAATACTTTTAAGTActacttcattttttttttgggggggggggggggtatctgttcattactatttatatttttggcaacttttacttttacttcactacattccgaaagaaaataatgtactactttttactccatacaatttccctgacacccaaaaggaCTTGTTACATgttgacaggaaaattgtccaattcacacacttgtcaagagaacatccctactgcatctgatctggcagactcactaaacacaaatgcttagtttgtaaatgatgcctgagtgttggagtgtgcccctggctatcagtcaataaaaaaagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU823301 lncRNA downstream 11794 56108193 ~ 56108409 (-) True G724760
TU823297 lncRNA downstream 13339 56106595 ~ 56106864 (-) True G724756
TU823197 lncRNA downstream 141758 55977933 ~ 55978445 (-) True G724665
TU823146 lncRNA downstream 210133 55909708 ~ 55910070 (-) True G724617
TU823139 lncRNA downstream 220974 55899012 ~ 55899229 (-) True G724610
TU823583 lncRNA upstream 44549 56170080 ~ 56183166 (-) False G724978
TU823585 lncRNA upstream 56579 56182110 ~ 56183166 (-) True G724978
TU823525 lncRNA upstream 65246 56190777 ~ 56245802 (-) True G724929
TU823620 lncRNA upstream 86442 56211973 ~ 56212848 (-) True G725005
TU823608 lncRNA upstream 123576 56249107 ~ 56252439 (-) False G725000
XM_021613047.2 mRNA downstream 223861 55872953 ~ 55896342 (-) False LOC110530179
XM_021613046.2 mRNA downstream 280862 55815384 ~ 55839341 (-) True LOC110530178
XM_036985739.1 mRNA downstream 305275 55799908 ~ 55814928 (-) False LOC110530176
XM_021613042.2 mRNA downstream 305855 55801428 ~ 55814348 (-) True LOC110530176
XM_021613041.2 mRNA downstream 305860 55799908 ~ 55814343 (-) False LOC110530176
XM_021613049.2 mRNA upstream 149560 56275091 ~ 56294377 (-) True LOC110530183
XM_021613052.2 mRNA upstream 249057 56374588 ~ 56386152 (-) False LOC110530186
XM_021613051.2 mRNA upstream 249057 56374588 ~ 56386539 (-) False LOC110530186
XM_021613053.2 mRNA upstream 249057 56374588 ~ 56386555 (-) False LOC110530186
XM_021613061.2 mRNA upstream 344610 56470141 ~ 56486902 (-) False LOC110530191
TU822909 other downstream 328718 55785517 ~ 55791485 (-) True G724400
TU822777 other downstream 474189 55635538 ~ 55646014 (-) True G724287
TU822429 other downstream 723318 55396624 ~ 55396885 (-) True G723966
TU822417 other downstream 742427 55377281 ~ 55377776 (-) True G723955
TU821231 other downstream 1838225 54281685 ~ 54281978 (-) True G722864
TU823623 other upstream 93985 56219516 ~ 56232939 (-) True G725007
TU823714 other upstream 249122 56374653 ~ 56386516 (-) False LOC110530186
TU823713 other upstream 257598 56383129 ~ 56386516 (-) True LOC110530186
TU823957 other upstream 462812 56588343 ~ 56589271 (-) True G725280
TU825127 other upstream 704110 56829641 ~ 56840126 (-) True penka

Expression Profile