RNA id: TU823620


Basic Information

Item Value
RNA id TU823620
length 606
lncRNA type intronic
GC content 0.43
exon number 2
gene id G725005
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56211973 ~ 56212848 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctctctccattactctccctctctctctttatctctctttctctccctctctccattactctctctctctttatctctctttctctccctctctccattactctctctctctctttatctctctttctctccctctctccattactctctctctctctctttatctctctttctctccctctctccattactctttctctctctccataactctctctctctccattactctctctctctctccattactctctctctctctctttatctctctttctctctctctctccattactctctctctctccattactctctctctctctccattactctctctctctctccattactctctatctctctccattactctctctctctctctctttatctctctttctctctctctctccattactctctctctctctccattactctctctctctctttatctctctttctctctctctctccattactctctctctctctctctttatctctctttctctctctccattactctctctctctctccattactctctctctctctccattactctctctctctctccattactctctctctctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU823526 lncRNA downstream 11223 56109205 ~ 56200750 (-) True G724930
TU823583 lncRNA downstream 28807 56170080 ~ 56183166 (-) False G724978
TU823585 lncRNA downstream 28807 56182110 ~ 56183166 (-) True G724978
TU823545 lncRNA downstream 83685 56120203 ~ 56128288 (-) True G724943
TU823540 lncRNA downstream 86442 56120203 ~ 56125531 (-) False G724943
TU823608 lncRNA upstream 36259 56249107 ~ 56252439 (-) False G725000
TU823609 lncRNA upstream 36259 56249107 ~ 56252439 (-) False G725000
TU823610 lncRNA upstream 36259 56249107 ~ 56252439 (-) False G725000
TU823611 lncRNA upstream 36259 56249107 ~ 56252439 (-) False G725000
TU823612 lncRNA upstream 36259 56249107 ~ 56252439 (-) False G725000
XM_021613047.2 mRNA downstream 315631 55872953 ~ 55896342 (-) False LOC110530179
XM_021613046.2 mRNA downstream 372632 55815384 ~ 55839341 (-) True LOC110530178
XM_036985739.1 mRNA downstream 397045 55799908 ~ 55814928 (-) False LOC110530176
XM_021613042.2 mRNA downstream 397625 55801428 ~ 55814348 (-) True LOC110530176
XM_021613041.2 mRNA downstream 397630 55799908 ~ 55814343 (-) False LOC110530176
XM_021613049.2 mRNA upstream 62243 56275091 ~ 56294377 (-) True LOC110530183
XM_021613052.2 mRNA upstream 161740 56374588 ~ 56386152 (-) False LOC110530186
XM_021613051.2 mRNA upstream 161740 56374588 ~ 56386539 (-) False LOC110530186
XM_021613053.2 mRNA upstream 161740 56374588 ~ 56386555 (-) False LOC110530186
XM_021613061.2 mRNA upstream 257293 56470141 ~ 56486902 (-) False LOC110530191
TU823541 other downstream 83685 56120203 ~ 56128288 (-) False G724943
TU822909 other downstream 420488 55785517 ~ 55791485 (-) True G724400
TU822777 other downstream 565959 55635538 ~ 55646014 (-) True G724287
TU822429 other downstream 815088 55396624 ~ 55396885 (-) True G723966
TU822417 other downstream 834197 55377281 ~ 55377776 (-) True G723955
TU823623 other upstream 6668 56219516 ~ 56232939 (-) True G725007
TU823714 other upstream 161805 56374653 ~ 56386516 (-) False LOC110530186
TU823713 other upstream 170281 56383129 ~ 56386516 (-) True LOC110530186
TU823957 other upstream 375495 56588343 ~ 56589271 (-) True G725280
TU825127 other upstream 616793 56829641 ~ 56840126 (-) True penka

Expression Profile