RNA id: TU823693


Basic Information

Item Value
RNA id TU823693
length 438
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id G725068
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56337726 ~ 56366731 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggcctggtcgggtgtccgtAGTATATCCGTcacgtccgactcattgaagaagaactcctcgtccaatttgagatttgtgcaaatctttctaaaacTGAAAATGGACAATTTAAAGGATATCAAATCAACAAAGAGgttTACAGACGAGGAGGCATACAAAGGTATGTCAATTGGTATTGGTATGTAATGCAGATCACatttaccatcctcctccctttcctcttcaatgaatatcccataggcctctacattatggacaaggaaacctaTTCGATCACCATGTcctgcaaaatcattctggctatggatacggagaacatcaacacattaacatcaacacgccagaggatatacccattggacttggggctctgctgggaTTTTACctcatatttagattttttattcTGCTATGccactaaaatcataataaacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU823690 lncRNA downstream 7142 56330312 ~ 56330584 (-) True G725065
TU823687 lncRNA downstream 8807 56328662 ~ 56328919 (-) True G725062
TU823662 lncRNA downstream 64730 56272294 ~ 56272996 (-) True G725038
TU823612 lncRNA downstream 85287 56249107 ~ 56252439 (-) False G725000
TU823727 lncRNA upstream 2308 56369039 ~ 56369248 (-) True G725090
TU823715 lncRNA upstream 7922 56374653 ~ 56380866 (-) False LOC110530186
TU823737 lncRNA upstream 35396 56402127 ~ 56402459 (-) True G725100
TU823717 lncRNA upstream 56308 56423039 ~ 56424581 (-) True G725081
TU823753 lncRNA upstream 64855 56431586 ~ 56432046 (-) True G725115
XM_021613049.2 mRNA downstream 43349 56275091 ~ 56294377 (-) True LOC110530183
XM_021613047.2 mRNA downstream 441384 55872953 ~ 55896342 (-) False LOC110530179
XM_021613046.2 mRNA downstream 498385 55815384 ~ 55839341 (-) True LOC110530178
XM_036985739.1 mRNA downstream 522798 55799908 ~ 55814928 (-) False LOC110530176
XM_021613052.2 mRNA upstream 7857 56374588 ~ 56386152 (-) False LOC110530186
XM_021613051.2 mRNA upstream 7857 56374588 ~ 56386539 (-) False LOC110530186
XM_021613053.2 mRNA upstream 7857 56374588 ~ 56386555 (-) False LOC110530186
XM_021613061.2 mRNA upstream 103410 56470141 ~ 56486902 (-) False LOC110530191
XM_021613062.2 mRNA upstream 103410 56470141 ~ 56486903 (-) False LOC110530191
TU823623 other downstream 104787 56219516 ~ 56232939 (-) True G725007
TU823541 other downstream 209438 56120203 ~ 56128288 (-) False G724943
TU822909 other downstream 546241 55785517 ~ 55791485 (-) True G724400
TU822777 other downstream 691712 55635538 ~ 55646014 (-) True G724287
TU822429 other downstream 940841 55396624 ~ 55396885 (-) True G723966
TU823714 other upstream 7922 56374653 ~ 56386516 (-) False LOC110530186
TU823713 other upstream 16398 56383129 ~ 56386516 (-) True LOC110530186
TU823957 other upstream 221612 56588343 ~ 56589271 (-) True G725280
TU825127 other upstream 462910 56829641 ~ 56840126 (-) True penka
TU825323 other upstream 769410 57136141 ~ 57137113 (-) True G726496

Expression Profile