RNA id: TU823896


Basic Information

Item Value
RNA id TU823896
length 269
lncRNA type antisense_over
GC content 0.64
exon number 1
gene id G725233
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56494934 ~ 56495202 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTGTTCTCATTGGCTGGCTGTTGTGGGTTGATGGGTGCCGGTTGGATGTTTTGTGCGGTGATCTGACCGGTGGCGGCGTGCAAGCCCTGGGCGCTGATGGTGGTTGGCTGGATGCCCTGCGTGGCCATGCCGGCAGGCTGGATGTTCTGCGTGTTGATCTGAGCGATGCGGTCCACCGTCATCAGCTGCATGGGGTTGAGGTGCACCGCCGACGCCACGCCCACACTCGTCTGGGTCTGCATGGCCGTGCCGCTGGGGGCCTGAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU823895 lncRNA downstream 2018 56492681 ~ 56492916 (-) True G725232
TU823894 lncRNA downstream 2423 56492294 ~ 56492511 (-) True G725231
TU823893 lncRNA downstream 3389 56491288 ~ 56491545 (-) True G725230
TU823886 lncRNA downstream 33413 56461279 ~ 56461521 (-) True G725223
TU823753 lncRNA downstream 62888 56431586 ~ 56432046 (-) True G725115
TU823899 lncRNA upstream 2710 56497912 ~ 56498148 (-) True G725236
TU823902 lncRNA upstream 3370 56498572 ~ 56499236 (-) False G725237
TU823903 lncRNA upstream 3370 56498572 ~ 56499157 (-) False G725237
TU823900 lncRNA upstream 3612 56498814 ~ 56499157 (-) False G725237
TU823901 lncRNA upstream 3612 56498814 ~ 56499236 (-) True G725237
XM_036985745.1 mRNA downstream 8030 56470141 ~ 56486904 (-) True LOC110530191
XM_021613062.2 mRNA downstream 8031 56470141 ~ 56486903 (-) False LOC110530191
XM_036985744.1 mRNA downstream 8031 56470141 ~ 56486903 (-) False LOC110530191
XM_021613061.2 mRNA downstream 8032 56470141 ~ 56486902 (-) False LOC110530191
XM_021613053.2 mRNA downstream 108379 56374588 ~ 56386555 (-) False LOC110530186
XM_021613057.2 mRNA upstream 10093 56505295 ~ 56520767 (-) False LOC110530189
XM_021613058.2 mRNA upstream 14791 56509993 ~ 56520767 (-) False LOC110530189
XM_021613059.2 mRNA upstream 14791 56509993 ~ 56522597 (-) False LOC110530189
XM_021613060.2 mRNA upstream 14791 56509993 ~ 56522597 (-) True LOC110530189
XM_036985746.1 mRNA upstream 27691 56522893 ~ 56526802 (-) True LOC110530192
TU823714 other downstream 108418 56374653 ~ 56386516 (-) False LOC110530186
TU823713 other downstream 108418 56383129 ~ 56386516 (-) True LOC110530186
TU823623 other downstream 261995 56219516 ~ 56232939 (-) True G725007
TU823541 other downstream 366646 56120203 ~ 56128288 (-) False G724943
TU822909 other downstream 703449 55785517 ~ 55791485 (-) True G724400
TU823957 other upstream 93141 56588343 ~ 56589271 (-) True G725280
TU825127 other upstream 334439 56829641 ~ 56840126 (-) True penka
TU825323 other upstream 640939 57136141 ~ 57137113 (-) True G726496
TU825404 other upstream 791314 57286516 ~ 57305526 (-) True chd7
TU825750 other upstream 1310186 57805388 ~ 57811422 (-) True G726885

Expression Profile