RNA id: TU823900



Basic Information


Item Value
RNA id TU823900
length 344
lncRNA type antisense_over
GC content 0.60
exon number 1
gene id G725237
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56498572 ~ 56499236 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTGGTTTGGAGGTATCCATGGCCTCCACCTCCTGCTTTATCTTGATCTCAGGGAGGGTGGAGCTTATTCCACATGCCGCCGTGCTACTGGCCGCTGACTGGGTAGGCGGAACAACCACGTTGGCCATAGACAAGATTGGTGGAGTGATGGCGGACAGGGCGGGGCCAGGCTGTGAGTGTGGGGGTGCTGACACTGAGAGGAGCGTCTGGATTGGCTGAGAGGGTTGCTGGTGGGGCGGGGCTCCGGGATGCTGCTGGTGTTCATTGGTCTGATGGCTGGGCAGAGCCTCCATGGATGATGACATCACCGCGGGAGCCAGGGACACGTGGAGATCAGGCTTGTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU823899 lncRNA downstream 666 56497912 ~ 56498148 (-) True G725236
TU823896 lncRNA downstream 3612 56494934 ~ 56495202 (-) True G725233
TU823895 lncRNA downstream 5898 56492681 ~ 56492916 (-) True G725232
TU823894 lncRNA downstream 6303 56492294 ~ 56492511 (-) True G725231
TU823893 lncRNA downstream 7269 56491288 ~ 56491545 (-) True G725230
TU823904 lncRNA upstream 235 56499392 ~ 56500475 (-) True G725238
TU823911 lncRNA upstream 28433 56527590 ~ 56527810 (-) True G725245
TU823921 lncRNA upstream 33305 56532462 ~ 56532665 (-) True G725254
TU823924 lncRNA upstream 36392 56535549 ~ 56535753 (-) True G725257
TU823927 lncRNA upstream 38025 56537182 ~ 56537402 (-) True G725260
XM_036985745.1 mRNA downstream 11910 56470141 ~ 56486904 (-) True LOC110530191
XM_021613062.2 mRNA downstream 11911 56470141 ~ 56486903 (-) False LOC110530191
XM_036985744.1 mRNA downstream 11911 56470141 ~ 56486903 (-) False LOC110530191
XM_021613061.2 mRNA downstream 11912 56470141 ~ 56486902 (-) False LOC110530191
XM_021613053.2 mRNA downstream 112259 56374588 ~ 56386555 (-) False LOC110530186
XM_021613057.2 mRNA upstream 6138 56505295 ~ 56520767 (-) False LOC110530189
XM_021613058.2 mRNA upstream 10836 56509993 ~ 56520767 (-) False LOC110530189
XM_021613059.2 mRNA upstream 10836 56509993 ~ 56522597 (-) False LOC110530189
XM_021613060.2 mRNA upstream 10836 56509993 ~ 56522597 (-) True LOC110530189
XM_036985746.1 mRNA upstream 23736 56522893 ~ 56526802 (-) True LOC110530192
TU823714 other downstream 112298 56374653 ~ 56386516 (-) False LOC110530186
TU823713 other downstream 112298 56383129 ~ 56386516 (-) True LOC110530186
TU823623 other downstream 265875 56219516 ~ 56232939 (-) True G725007
TU823541 other downstream 370526 56120203 ~ 56128288 (-) False G724943
TU822909 other downstream 707329 55785517 ~ 55791485 (-) True G724400
TU823957 other upstream 89186 56588343 ~ 56589271 (-) True G725280
TU825127 other upstream 330484 56829641 ~ 56840126 (-) True penka
TU825323 other upstream 636984 57136141 ~ 57137113 (-) True G726496
TU825404 other upstream 787359 57286516 ~ 57305526 (-) True chd7
TU825750 other upstream 1306231 57805388 ~ 57811422 (-) True G726885

Expression Profile