RNA id: TU823943


Basic Information

Item Value
RNA id TU823943
length 931
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G725268
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56554346 ~ 56555276 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aattgggcgtgcaaaattattcagcccccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcatatcgagagactgacattttttcccattcctccttgcaaaacagcttgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgttaatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtctcttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccgtcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagaaggcccaaaccatgatgctgccaccaccttgtttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacacgtttggtgtgtctcccaggtggcttgtggcaaactttaatcaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcataggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU823942 lncRNA downstream 484 56553580 ~ 56553862 (-) True G725267
TU823912 lncRNA downstream 3680 56547496 ~ 56550666 (-) False LOC110530193
TU823913 lncRNA downstream 3680 56547496 ~ 56550666 (-) True LOC110530193
TU823928 lncRNA downstream 12948 56539833 ~ 56541398 (-) True LOC118965616
TU823927 lncRNA downstream 16944 56537182 ~ 56537402 (-) True G725260
TU823949 lncRNA upstream 21581 56576857 ~ 56577321 (-) False LOC118965627
TU823951 lncRNA upstream 24096 56579372 ~ 56579645 (-) True LOC118965627
TU823954 lncRNA upstream 28470 56583746 ~ 56583845 (-) True lrrc53
TU823959 lncRNA upstream 35827 56591103 ~ 56591352 (-) True G725282
TU823961 lncRNA upstream 37507 56592783 ~ 56593012 (-) True G725284
XR_005052919.1 mRNA downstream 3658 56544944 ~ 56550688 (-) False LOC110530193
XR_005053056.1 mRNA downstream 4767 56549500 ~ 56549579 (-) True LOC118965678
XR_005053062.1 mRNA downstream 5014 56549263 ~ 56549332 (-) True LOC118965684
XR_005053037.1 mRNA downstream 5259 56549011 ~ 56549087 (-) True LOC118965658
XR_005053057.1 mRNA downstream 5505 56548758 ~ 56548841 (-) True LOC118965679
LOC118965627 mRNA upstream 21686 56576962 ~ 56579446 (-) False LOC118965627
XM_036985749.1 mRNA upstream 27750 56583026 ~ 56588553 (-) False lrrc53
XR_005052921.1 mRNA upstream 33508 56588784 ~ 56601317 (-) True LOC110530944
XM_036985752.1 mRNA upstream 114631 56669907 ~ 56763301 (-) False LOC110530945
XM_036985753.1 mRNA upstream 114631 56669907 ~ 56763302 (-) False LOC110530945
TU823714 other downstream 167830 56374653 ~ 56386516 (-) False LOC110530186
TU823713 other downstream 167830 56383129 ~ 56386516 (-) True LOC110530186
TU823623 other downstream 321407 56219516 ~ 56232939 (-) True G725007
TU823541 other downstream 426058 56120203 ~ 56128288 (-) False G724943
TU822909 other downstream 762861 55785517 ~ 55791485 (-) True G724400
TU823957 other upstream 33067 56588343 ~ 56589271 (-) True G725280
TU825127 other upstream 274365 56829641 ~ 56840126 (-) True penka
TU825323 other upstream 580865 57136141 ~ 57137113 (-) True G726496
TU825404 other upstream 731240 57286516 ~ 57305526 (-) True chd7
TU825750 other upstream 1250112 57805388 ~ 57811422 (-) True G726885

Expression Profile