RNA id: TU823957


Basic Information

Item Value
RNA id TU823957
length 461
RNA type TUCP
GC content 0.55
exon number 3
gene id G725280
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56588343 ~ 56589271 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCCCATGAAGGAGTTAAGACAAGATGGTGCTTTAAGCTTTAAGACGATGATTCCCTGAGACCACTTTCATGGATGAGCAAACAAAAAACCATGCAGCCTGGCCAATAACCAAACCATGAGAAGTGTTCTCCTGATGCTGATGCTGTCAATCCCACGCACCCAGTGCCTCTCTTCATGTCCAGCTTCCTGTGTGGTGTGCTCTGACGACGCTGTCATCTGCCACAAGCTCTCCAACTTCATAGAGGCCCCTGAGACCACCAGGGCCCTGATGCTGACCGATGGCGCCATCGTCTCTGTGGACCGCCACTTCCTTTCTGACATGTCCAACATGACCGTGCTGTCCCTGAGCCACAACGCTATCACCACCCTCACCCACGACGCCTTCCAAAATCTCACCATCCTCCACACCCTCCTCCTGGACCACAACCACCTCTCCAGCCAGACCCTGGACAGGGCCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU823954 lncRNA downstream 4498 56583746 ~ 56583845 (-) True lrrc53
TU823951 lncRNA downstream 8698 56579372 ~ 56579645 (-) True LOC118965627
TU823949 lncRNA downstream 11022 56576857 ~ 56577321 (-) False LOC118965627
TU823943 lncRNA downstream 33067 56554346 ~ 56555276 (-) True G725268
TU823942 lncRNA downstream 34481 56553580 ~ 56553862 (-) True G725267
TU823959 lncRNA upstream 1832 56591103 ~ 56591352 (-) True G725282
TU823961 lncRNA upstream 3512 56592783 ~ 56593012 (-) True G725284
TU823966 lncRNA upstream 7980 56597251 ~ 56597872 (-) True G725289
TU823976 lncRNA upstream 15996 56605267 ~ 56605699 (-) True G725299
TU823986 lncRNA upstream 24681 56613952 ~ 56614394 (-) True G725309
LOC118965627 mRNA downstream 8897 56576962 ~ 56579446 (-) False LOC118965627
XR_005052919.1 mRNA downstream 37655 56544944 ~ 56550688 (-) False LOC110530193
XR_005053056.1 mRNA downstream 38764 56549500 ~ 56549579 (-) True LOC118965678
XR_005053062.1 mRNA downstream 39011 56549263 ~ 56549332 (-) True LOC118965684
XR_005053037.1 mRNA downstream 39256 56549011 ~ 56549087 (-) True LOC118965658
XM_036985752.1 mRNA upstream 80636 56669907 ~ 56763301 (-) False LOC110530945
XM_036985753.1 mRNA upstream 80636 56669907 ~ 56763302 (-) False LOC110530945
XM_036985754.1 mRNA upstream 80636 56669907 ~ 56763302 (-) False LOC110530945
XM_036985755.1 mRNA upstream 80637 56669908 ~ 56763300 (-) True LOC110530945
XM_021613077.2 mRNA upstream 194007 56783278 ~ 56793172 (-) True LOC110530198
TU823714 other downstream 201827 56374653 ~ 56386516 (-) False LOC110530186
TU823713 other downstream 201827 56383129 ~ 56386516 (-) True LOC110530186
TU823623 other downstream 355404 56219516 ~ 56232939 (-) True G725007
TU823541 other downstream 460055 56120203 ~ 56128288 (-) False G724943
TU822909 other downstream 796858 55785517 ~ 55791485 (-) True G724400
TU825127 other upstream 240370 56829641 ~ 56840126 (-) True penka
TU825323 other upstream 546870 57136141 ~ 57137113 (-) True G726496
TU825404 other upstream 697245 57286516 ~ 57305526 (-) True chd7
TU825750 other upstream 1216117 57805388 ~ 57811422 (-) True G726885
TU825774 other upstream 1230776 57820047 ~ 57846689 (-) True G726900

Expression Profile