RNA id: TU823959


Basic Information

Item Value
RNA id TU823959
length 250
lncRNA type intronic
GC content 0.42
exon number 1
gene id G725282
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56591103 ~ 56591352 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCaaattccaagtgggctgtcatatgccttttattgaggagtggcttccgtcttgttttttgctctgacatgcactgtcaactgtggaaccttatatagacaggtgtgtgccttttcaaatcatgtccaatcaattgaatttaccacaggtggactccaatcaagttgtagaaacatctcaaaggtgatcaatggaaacaggatgcacctgagctcaatttcgagtctcatagcaaagggtctgaatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU823954 lncRNA downstream 7258 56583746 ~ 56583845 (-) True lrrc53
TU823951 lncRNA downstream 11458 56579372 ~ 56579645 (-) True LOC118965627
TU823949 lncRNA downstream 13782 56576857 ~ 56577321 (-) False LOC118965627
TU823943 lncRNA downstream 35827 56554346 ~ 56555276 (-) True G725268
TU823942 lncRNA downstream 37241 56553580 ~ 56553862 (-) True G725267
TU823961 lncRNA upstream 1431 56592783 ~ 56593012 (-) True G725284
TU823966 lncRNA upstream 5899 56597251 ~ 56597872 (-) True G725289
TU823976 lncRNA upstream 13915 56605267 ~ 56605699 (-) True G725299
TU823986 lncRNA upstream 22600 56613952 ~ 56614394 (-) True G725309
TU823988 lncRNA upstream 23762 56615114 ~ 56615433 (-) True G725311
XM_036985749.1 mRNA downstream 2550 56583026 ~ 56588553 (-) False lrrc53
LOC118965627 mRNA downstream 11657 56576962 ~ 56579446 (-) False LOC118965627
XR_005053056.1 mRNA downstream 41524 56549500 ~ 56549579 (-) True LOC118965678
XR_005053062.1 mRNA downstream 41771 56549263 ~ 56549332 (-) True LOC118965684
XR_005053037.1 mRNA downstream 42016 56549011 ~ 56549087 (-) True LOC118965658
XM_036985752.1 mRNA upstream 78555 56669907 ~ 56763301 (-) False LOC110530945
XM_036985753.1 mRNA upstream 78555 56669907 ~ 56763302 (-) False LOC110530945
XM_036985754.1 mRNA upstream 78555 56669907 ~ 56763302 (-) False LOC110530945
XM_036985755.1 mRNA upstream 78556 56669908 ~ 56763300 (-) True LOC110530945
XM_021613077.2 mRNA upstream 191926 56783278 ~ 56793172 (-) True LOC110530198
TU823957 other downstream 1832 56588343 ~ 56589271 (-) True G725280
TU823714 other downstream 204587 56374653 ~ 56386516 (-) False LOC110530186
TU823713 other downstream 204587 56383129 ~ 56386516 (-) True LOC110530186
TU823623 other downstream 358164 56219516 ~ 56232939 (-) True G725007
TU823541 other downstream 462815 56120203 ~ 56128288 (-) False G724943
TU825127 other upstream 238289 56829641 ~ 56840126 (-) True penka
TU825323 other upstream 544789 57136141 ~ 57137113 (-) True G726496
TU825404 other upstream 695164 57286516 ~ 57305526 (-) True chd7
TU825750 other upstream 1214036 57805388 ~ 57811422 (-) True G726885
TU825774 other upstream 1228695 57820047 ~ 57846689 (-) True G726900

Expression Profile