RNA id: TU823976


Basic Information

Item Value
RNA id TU823976
length 433
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G725299
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56605267 ~ 56605699 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAATTccttcccaacagtcttgaaagagttcccacatatgctgagtacttgttggctgcttttccttcagtctgcggtccaactcatcccaaaccatctcaattgggttgaggttgggtgattgtggaggccaggttatctgatacagcactccatcactctccttcttggtcaaataatcgttacacagcctggaggtgtgttgggtcactgtccgGTTGAAAAACCAATTATAGTcacactaagtgcaaaccagatgggacggtgtatcgctgtagaatgctgtggtagccatgctggttaagtgtgccttgaattctaaataaatcagtgtcaccagtacagcacccccacacaatcacacctcatccttcatgcttcatggtgggaaccacacatgcagagatcatccgttcacctactctgcgtctc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU823966 lncRNA downstream 7395 56597251 ~ 56597872 (-) True G725289
TU823961 lncRNA downstream 12255 56592783 ~ 56593012 (-) True G725284
TU823959 lncRNA downstream 13915 56591103 ~ 56591352 (-) True G725282
TU823954 lncRNA downstream 21422 56583746 ~ 56583845 (-) True lrrc53
TU823951 lncRNA downstream 25622 56579372 ~ 56579645 (-) True LOC118965627
TU823986 lncRNA upstream 8253 56613952 ~ 56614394 (-) True G725309
TU823988 lncRNA upstream 9415 56615114 ~ 56615433 (-) True G725311
TU823998 lncRNA upstream 18981 56624680 ~ 56625152 (-) True G725321
TU824006 lncRNA upstream 25290 56630989 ~ 56631245 (-) True G725329
TU824020 lncRNA upstream 32426 56638125 ~ 56638765 (-) True G725343
XR_005052921.1 mRNA downstream 3950 56588784 ~ 56601317 (-) True LOC110530944
XM_036985749.1 mRNA downstream 16714 56583026 ~ 56588553 (-) False lrrc53
LOC118965627 mRNA downstream 25821 56576962 ~ 56579446 (-) False LOC118965627
XR_005053056.1 mRNA downstream 55688 56549500 ~ 56549579 (-) True LOC118965678
XR_005053062.1 mRNA downstream 55935 56549263 ~ 56549332 (-) True LOC118965684
XM_036985752.1 mRNA upstream 64208 56669907 ~ 56763301 (-) False LOC110530945
XM_036985753.1 mRNA upstream 64208 56669907 ~ 56763302 (-) False LOC110530945
XM_036985754.1 mRNA upstream 64208 56669907 ~ 56763302 (-) False LOC110530945
XM_036985755.1 mRNA upstream 64209 56669908 ~ 56763300 (-) True LOC110530945
XM_021613077.2 mRNA upstream 177579 56783278 ~ 56793172 (-) True LOC110530198
TU823957 other downstream 15996 56588343 ~ 56589271 (-) True G725280
TU823714 other downstream 218751 56374653 ~ 56386516 (-) False LOC110530186
TU823713 other downstream 218751 56383129 ~ 56386516 (-) True LOC110530186
TU823623 other downstream 372328 56219516 ~ 56232939 (-) True G725007
TU823541 other downstream 476979 56120203 ~ 56128288 (-) False G724943
TU825127 other upstream 223942 56829641 ~ 56840126 (-) True penka
TU825323 other upstream 530442 57136141 ~ 57137113 (-) True G726496
TU825404 other upstream 680817 57286516 ~ 57305526 (-) True chd7
TU825750 other upstream 1199689 57805388 ~ 57811422 (-) True G726885
TU825774 other upstream 1214348 57820047 ~ 57846689 (-) True G726900

Expression Profile