RNA id: TU823988


Basic Information

Item Value
RNA id TU823988
length 320
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G725311
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56615114 ~ 56615433 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAAAcggaacactacaaaatacaaaacaaacaacGTGAAACAAACAaaccagtcccgtgtggcacaaacacggaaaataaacacccacaactcaaaagtgaaaccaggctacctaagtatgattctcaatcagagacaactaacgacacctgcctctgattgagaaccatactaggccgaacacagaaaccaacatagaaaaacaaacagactgcccaccccaactcacaccctgaccatactaaaacaaagacaaaacaaaggaactaaggtcagaatgtgacagagaCCATGTGTCCCCCCCACCTGTGTATGTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU823986 lncRNA downstream 720 56613952 ~ 56614394 (-) True G725309
TU823976 lncRNA downstream 9415 56605267 ~ 56605699 (-) True G725299
TU823966 lncRNA downstream 17242 56597251 ~ 56597872 (-) True G725289
TU823961 lncRNA downstream 22102 56592783 ~ 56593012 (-) True G725284
TU823959 lncRNA downstream 23762 56591103 ~ 56591352 (-) True G725282
TU823998 lncRNA upstream 9247 56624680 ~ 56625152 (-) True G725321
TU824006 lncRNA upstream 15556 56630989 ~ 56631245 (-) True G725329
TU824020 lncRNA upstream 22692 56638125 ~ 56638765 (-) True G725343
TU824023 lncRNA upstream 26109 56641542 ~ 56641789 (-) True G725346
TU825096 lncRNA upstream 150673 56766106 ~ 56766593 (-) True G726295
XR_005052921.1 mRNA downstream 13797 56588784 ~ 56601317 (-) True LOC110530944
XM_036985749.1 mRNA downstream 26561 56583026 ~ 56588553 (-) False lrrc53
LOC118965627 mRNA downstream 35668 56576962 ~ 56579446 (-) False LOC118965627
XR_005053056.1 mRNA downstream 65535 56549500 ~ 56549579 (-) True LOC118965678
XR_005053062.1 mRNA downstream 65782 56549263 ~ 56549332 (-) True LOC118965684
XM_036985752.1 mRNA upstream 54474 56669907 ~ 56763301 (-) False LOC110530945
XM_036985753.1 mRNA upstream 54474 56669907 ~ 56763302 (-) False LOC110530945
XM_036985754.1 mRNA upstream 54474 56669907 ~ 56763302 (-) False LOC110530945
XM_036985755.1 mRNA upstream 54475 56669908 ~ 56763300 (-) True LOC110530945
XM_021613077.2 mRNA upstream 167845 56783278 ~ 56793172 (-) True LOC110530198
TU823957 other downstream 25843 56588343 ~ 56589271 (-) True G725280
TU823714 other downstream 228598 56374653 ~ 56386516 (-) False LOC110530186
TU823713 other downstream 228598 56383129 ~ 56386516 (-) True LOC110530186
TU823623 other downstream 382175 56219516 ~ 56232939 (-) True G725007
TU823541 other downstream 486826 56120203 ~ 56128288 (-) False G724943
TU825127 other upstream 214208 56829641 ~ 56840126 (-) True penka
TU825323 other upstream 520708 57136141 ~ 57137113 (-) True G726496
TU825404 other upstream 671083 57286516 ~ 57305526 (-) True chd7
TU825750 other upstream 1189955 57805388 ~ 57811422 (-) True G726885
TU825774 other upstream 1204614 57820047 ~ 57846689 (-) True G726900

Expression Profile