RNA id: TU825227


Basic Information

Item Value
RNA id TU825227
length 200
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G726403
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 56951675 ~ 56951874 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCtatatgtggctgctatgaaagtgaactgtgtgtgtgggtgatcaagggtgtattcattctgccgaatATGTTGCAAAATATTTCTTAAACGGAACCAAACGGGgatggacctacctgaatttgtcaaaaaaaaacttgttttagTTGCTAATCAAAAAGTTTTGCAACTGTTTGgtctaatgaatacaccccagatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU825113 lncRNA downstream 124007 56819103 ~ 56827668 (-) True LOC110530946
TU825111 lncRNA downstream 132649 56813859 ~ 56819026 (-) False LOC110530946
TU825077 lncRNA downstream 168629 56782379 ~ 56783046 (-) True G726278
TU825078 lncRNA downstream 171915 56779524 ~ 56779760 (-) True G726279
TU825096 lncRNA downstream 185082 56766106 ~ 56766593 (-) True G726295
TU825228 lncRNA upstream 99 56951973 ~ 56952179 (-) True G726404
TU825254 lncRNA upstream 37247 56989121 ~ 56989770 (-) True G726430
TU825253 lncRNA upstream 38090 56989964 ~ 56990336 (-) True G726429
TU825277 lncRNA upstream 69807 57021681 ~ 57022411 (-) True G726453
TU825353 lncRNA upstream 173140 57125014 ~ 57130518 (-) True G726521
XM_036985756.1 mRNA downstream 4885 56896586 ~ 56946790 (-) False LOC110530203
XM_036985757.1 mRNA downstream 4885 56896586 ~ 56946790 (-) False LOC110530203
XM_036985758.1 mRNA downstream 4885 56896586 ~ 56946790 (-) False LOC110530203
XM_036985759.1 mRNA downstream 4885 56896586 ~ 56946790 (-) False LOC110530203
XM_036985760.1 mRNA downstream 4885 56896586 ~ 56946790 (-) False LOC110530203
XM_021613082.2 mRNA upstream 56265 57008139 ~ 57031674 (-) True LOC110530205
XR_002474497.2 mRNA upstream 189105 57140979 ~ 57146180 (-) False LOC110530209
XM_021613092.2 mRNA upstream 223997 57175871 ~ 57180428 (-) False LOC110530210
XM_021613093.2 mRNA upstream 223998 57175872 ~ 57180428 (-) True LOC110530210
XM_036985766.1 mRNA upstream 272184 57224058 ~ 57305564 (-) False chd7
TU825127 other downstream 111549 56829641 ~ 56840126 (-) True penka
TU823957 other downstream 362404 56588343 ~ 56589271 (-) True G725280
TU823714 other downstream 565159 56374653 ~ 56386516 (-) False LOC110530186
TU823713 other downstream 565159 56383129 ~ 56386516 (-) True LOC110530186
TU823623 other downstream 718736 56219516 ~ 56232939 (-) True G725007
TU825323 other upstream 184267 57136141 ~ 57137113 (-) True G726496
TU825404 other upstream 334642 57286516 ~ 57305526 (-) True chd7
TU825750 other upstream 853514 57805388 ~ 57811422 (-) True G726885
TU825774 other upstream 868173 57820047 ~ 57846689 (-) True G726900
TU825771 other upstream 910864 57862738 ~ 57863877 (-) True LOC110530228

Expression Profile