RNA id: TU825353


Basic Information

Item Value
RNA id TU825353
length 4980
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G726521
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57125014 ~ 57130518 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCTTCCAGAATCCAGCAACTTTATTAACAAAGAACAAGCACATAGCTGATCCTTTCAAATCCACTTCTCCACCAAATGCAAAATAAATCATTGTCTAATTCTACAAATATCTTGTCTAGCGACTTTAAATAAAGCTATATTTTCTGATGTAAATTAACACAAAACTAAACCACATCGGAAACTAAGCTTACAGCACCTTGCCATCCTCTTGGCGCCTTTCCTTGTCCAGTTCATACTTCTATAGAGGACAGCATTATGATTTTTACCACAAGCAGGAAGTGGCTAAAACACTATGCACTATACATTGCGGAAATGGCTGTCCTGCACAGTATGGGGTTTCCTACTCCCATTCGCAGGGGTCTGTCACTGGAGACCTCTCACAGGTGGTGTTTCTCCTGAATCTTTTAACATCTGTGTCAGCAGAGGGAGTGAAAGATCACCGACATCAGTGCAGGTGTGAAGAGTTTAGCATCATTTCCGGACCCCCTTATCAGACATCTTGAGCTTTTTAGCAGCAGCTTTGGGGGACTCTTTATTTTTGGCGTCTTTGGGGACCTCCACCCTCTTACCCTTCACCTCTTTCACTGACTTCTTGTCTGGCTTTGTCGCATTCTTCTTAGCTTTCTTGCCCTGCTCCTGTTTCttattttctccctctttcttattttctccctccttctctttgtctctcctaaTCTTGCCCAAGGCCTTCTTAAACTCCCCCTTCTCTGGCTTGTCCTCCATCCTAGCTGCCGTTGCCACCTTAGCCTTCTTTGCCACCTCGTCCCTCGTCACCCCTAGgaccttctccttctccctggcCAGGATGTTCCTCACCTCGGCCAGCGCCATCTTGGCAATCTTTTTGGCCTCCAATCGCTCATGGATGATGGCCAGCTGCTGGTTCAGGGCCTCCCTCAGCTTCCAGCCCACGTCTTTGGTAAGAGGGTTTTCTTTTTTTGGCTTTTCTCTTGGAAACATGTCCTGGATTTTCATCTGAGGTTTAGAAAAACAAATAGTTAAAATATGGATATAGTCTCAGTAAGACTGGTGTATCTGCTTGGTGCTCAACTGCCAATATGAACAGCCGAATCGCAGAGCTTGCCTATAGTAGGGGAGAGCAACCGTTACAACAGAACAAAACCAGGCTCAACCAATAACAGATGGAGGGAAGTCTTGTACCTCTCTCAGCTTTCATTGACACCCGTGGCAAGCTCACTCATGGATGGGGCTAAGATTTTCTCTCACAATCTAATAGTAAAGCTTTTGACATAGAGCTTTCGGGAGTATTGGTAGTAATAATGCAGGCAGAATCTACTTGGGCCACCCCTCGTCTGGCATTGCCAAATAGTGGCTGCGGGTGAAGTCACGAAATCAGGGGCAAATTCAGTACGAATTAACAAAACTAAAAACCAGCCAGACCTCAAACAGATTCTAagttacagcccccccccccccaaaaaaaaactaaatgtgcatGTTGATAACATGGTAAAGCAGACAAAACGCTTCAACACATGTTGAGAGCATGGACTAGACTACAAAGCAATCTGGACATTCATCCACAACAAAGTACCTTTGGTCTCAGTAGCCGCCTCTTTTTTCTTGACCTTTGTTTTTGGAGATTCTGGTTCGATTAAGCTGGCTaagaagataaaaaaaaaaaaactatgacCACCAACATAAATCAACACTAACCTACCAATGTTCTATTTCAAAACTTTAGCAGAATATACAGGTTTCTTTAACTAGCAGACCTGCTTTCCATGAATGGAATGCCATGCATCCACGCATCTGAAAATTGACATGTGGCGTAGTCGGCTACTCAGAGCTGCTTGAAGTTTTGCTCTCAGCAGAGAGAATTTAAAAAAAGGGGAGCAGGTGAAGTACCTCTGTGTCTCGCTCTTTTCCGATCGGGTCGAGGTTCATCTGATATTTTTCAAAAGGAACATGGCATTAGAATCTAACAATGACCATTACTTACTGTGACCATTACTAATGAACACCAGGCAAAACTAATATCCAAAAATGACCAGAACTAAATTTGACAACTCAAAACATGCCCATGCCAAACCCCAAAGGCGGACGGACAGATGCTACCATTCAGGGCTCTACGCTGACCATTTTTACAAGCAGCATGTGCGCCTAAGTTGAACAATGTAGGAACACACCAGGAAATTTGGGAGCACAATCCAAAATATTTTGAGGtaataaagctagaatccttcatTTTTCTAGGCGCACTGGTGCTCCTAAATACAATTCCAGGTCTTacagcaaaatatttaggtgCAAAATACAAGTAAAATGGTCACACTGTGGACCCCTGCCACACATTCACGATTGCATGTGTTTACCCGTACCTCCTATTCTGATGGTTTTATTACACTACTTGTAAGAGTATGACTTGGAAATGATGACCATGTGAGAGTGACATTACTGTATAACTAATTTTACACTTTATCAATACATTTGGAATCATATTTGTCACTGGTGCCAAAGACCAATCATCATCAAAGCCCAAACAATAGATGGGTAGTTGCAATGGAAATATGTAAGATTAGTAAAGTTCATATTCAGTTTAGAGTGATTAACAAAATGTTtagcaaatgtatatatttttcccTTTCTGTAATACACATGATATCCAGTGTTCTGTTTTTAACACACTGGTTGGTCACATGTTATGGATTAAACTCATATCTGTTGATAGTGATTGGAGGTACAAGGACCGAGGACACTGATTATTATTGTATTCTGTGAAACAATGATTCTGTAGCAGCTGACAAAGTCACTGACTTTTAGTTTTTTACTTCCTACAAGCGTCTTGGGCTGGTGTTGTCTCCATGTTGCAACTTGTattaaatcaaattgatttatgaTTGACTTTATCTGCGACTGCTCTTCTTTTGTTCACAATCAAAAGGGGCGACAacaccagcccagcccagtccacAATCAAAAGGGGCGTCAAAGCACCATTTGTACAATGGCCATCCAGGAGTCACTGGTTGTGCGCATACTCCACTTGCCTCTTCGCCAGCCCCGACGACTTAAAAAGCAACATCAAGTCCTTCAGGGCTTGTTTGACAGGGTAATGCTAATAACCCAAAAGGCCACGCAACATGACCACACCTCACCAATTGGGTCACTTGTCTAGTTCTATTTTAAAATGGGCAGTTAAGTATGACATGACCCGCTTGAGCTGCGGCGACATAATCTACTACAGCCACTATGACTTATTTTCACACGAGAGCATGAATCTCACCAGTTCAACCTGTTCCTAGCTATACGGTCAATGCTTGGTCATTGTACTTGAGTACTAAGTCAAGCCTCTAAATGAGTGAAAGCCAATACGAAATCCGAATGGATTCCACCCAAAAGCTTGCTCGGCAGGTTTATTGTATCTTTGACAGTGCCATTCCTTATACCTTTTGTGCCAGACATGTGTTTGCTAGTACTTACAAGAAACCTGTCTTCGTTTGCTTTCAATGTTGTCATAGACAACACGTTTTTGACCATACATACCATTACAAATGACTTGAATTTCTTGAGTTCCATCTATAGACCACAATGTTTAGAGTTTGAAATCTAAACTAGCTGGGTAAGTCTCTTTAGGGCGAGTGGGAGTCAGCATTGACCCATTTCAGAGATCTGGGGTTCAGGTTATGATCTGCGTCTCAAAGCAGGTAAAAGGTCCACGGAGGGTGGAATTCGGTAAAAGTCCTTGAACTCATAGTCGGGCTCAAAAAGCATGGAATCCTCCACATCAGGGAGCACATTTTTCCAAAACCACCTCGGGCTAAGTATGCAACATCATATTTCCTAACCCTGTCCCAGGACGTCTAGAAAATTGGTTTAAGGAACAGTCGAAAGCTAGTTTCTCAAAGGGTTGGCTTTAACAAAAGTGGACAGCTAACAAGAAATGATTAACACCTGTGCAGTGCTCCAGCAAGCCGGTCTCTAAATATCTTATGTGCAAAGtttcaaccccccaaaaatctatacTTTACCATGCAAGGGAAAAAAAAGAACATTCACAAAATAAAACACATAAACCTTAGCGAATAAATCATCTGAAAAACACGTTTTTAATTGTGTTTAACGAATGGATGACGAAGACAGGGATTGGGGACAAATAGCAGACCTGAATACGTCCAAAAACCAACAAACACAGAACATGAATAGTAATCCTAATATGGACAACAGAAAAATAAACATGATAATGAGGGAATGCTTCACTGATAAAGAAAAATTATAATCTTCCACAAAACTTTCAATAAAGCAAAAACTTAGACGAAAGGTCAAACCAAAGTAAAAAAGTATAAATATAATTCCTGCTAAGTGGATAAAAATGTGCGAACGTTAGGGCCCTAGGGCATGCAGTACTGTGGTTGGAAAAAAGAGAGCCGATCTGTTACCCAAGTGCAGCTGTTCATTGCAGAAAATCGGGTGTTTGCAGTCTGTTAAGTGGAAATGCACATCATAGAAAAGCTGGCTGGCATTTAAAACTGCTGCAAAAATCCTGAAGGCATAGTCTTCGCCCCACCATCAAAAATCTTCAAAAAAAGACTTGAGGGGTCAACATCTACACGACTTAACCCTTCAAATTATTCTTCCAGGGAATGGTGATGTTTACGGGGTGTTTTTCAACAAACGCACCTCAAGCAATGGGAAACAAGTCTAAAGAAGCAACAAGTCCACTTGGGACTTCATGCCACGGGGGATATGGCTACTGGTTATGGTAAGCAAGGCCTACTGGTTATGGAGGCCTAAGATCACACAACTCTTTCCCTGAACCCCGTCAGTCTGAGAAGTGCCAGCACTTTCCTCCTCCGCCGCTCCATCCTCATCCTCAAACGGGTTTATGAGGCCATAGAGGAAGGTGAAGAAGCCTTGAAACCAATCGGAGCCCTCCTCCACTAACATATCCGGGACCTCCTCGAGGGAGTCCGACCTTTCCTGACTGCCATCTTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU825277 lncRNA downstream 102603 57021681 ~ 57022411 (-) True G726453
TU825253 lncRNA downstream 134678 56989964 ~ 56990336 (-) True G726429
TU825254 lncRNA downstream 135244 56989121 ~ 56989770 (-) True G726430
TU825228 lncRNA downstream 172835 56951973 ~ 56952179 (-) True G726404
TU825227 lncRNA downstream 173140 56951675 ~ 56951874 (-) True G726403
TU825321 lncRNA upstream 8557 57139075 ~ 57142711 (-) False LOC110530209
TU825322 lncRNA upstream 8557 57139075 ~ 57142711 (-) False LOC110530209
TU825324 lncRNA upstream 12612 57143130 ~ 57145005 (-) True LOC110530209
TU825438 lncRNA upstream 164106 57294624 ~ 57361794 (-) False G726598
TU825437 lncRNA upstream 225002 57355520 ~ 57361794 (-) False G726598
XM_021613082.2 mRNA downstream 93340 57008139 ~ 57031674 (-) True LOC110530205
XM_036985758.1 mRNA downstream 178224 56896586 ~ 56946790 (-) False LOC110530203
XR_002474497.2 mRNA upstream 10461 57140979 ~ 57146180 (-) False LOC110530209
XM_021613092.2 mRNA upstream 45353 57175871 ~ 57180428 (-) False LOC110530210
XM_021613093.2 mRNA upstream 45354 57175872 ~ 57180428 (-) True LOC110530210
XM_036985766.1 mRNA upstream 93540 57224058 ~ 57305564 (-) False chd7
XM_036985768.1 mRNA upstream 93540 57224058 ~ 57305564 (-) False chd7
TU825127 other downstream 284888 56829641 ~ 56840126 (-) True penka
TU823957 other downstream 535743 56588343 ~ 56589271 (-) True G725280
TU823714 other downstream 738498 56374653 ~ 56386516 (-) False LOC110530186
TU823713 other downstream 738498 56383129 ~ 56386516 (-) True LOC110530186
TU823623 other downstream 892075 56219516 ~ 56232939 (-) True G725007
TU825323 other upstream 5623 57136141 ~ 57137113 (-) True G726496
TU825404 other upstream 155998 57286516 ~ 57305526 (-) True chd7
TU825750 other upstream 674870 57805388 ~ 57811422 (-) True G726885
TU825774 other upstream 689529 57820047 ~ 57846689 (-) True G726900
TU825771 other upstream 732220 57862738 ~ 57863877 (-) True LOC110530228

Expression Profile