RNA id: TU825485


Basic Information

Item Value
RNA id TU825485
length 271
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G726644
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57407952 ~ 57408222 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaagtgactcatgttttgaaaccgttgtgttcctatgcacccctattggccactgaaagggatatcaaccagattcctttttctacgtattccctaaggtgtctacagcattgtgacgtagtttcacgcctttatgttgaagaatgagcgtaaacgactacattgcgtaagtggccagctgagggctctcagagtgattcttgtgtaatagacagaggtagtcatttttcctctcgctcctactgaaaagccaattgtcccggttaaTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU825480 lncRNA downstream 12395 57395277 ~ 57395557 (-) True G726639
TU825466 lncRNA downstream 41602 57366114 ~ 57366350 (-) True G726625
TU825438 lncRNA downstream 46158 57294624 ~ 57361794 (-) False G726598
TU825437 lncRNA downstream 46158 57355520 ~ 57361794 (-) False G726598
TU825439 lncRNA downstream 46158 57358323 ~ 57361794 (-) True G726598
TU825494 lncRNA upstream 11337 57419559 ~ 57419831 (-) True G726653
TU825544 lncRNA upstream 49332 57457554 ~ 57457860 (-) True G726692
TU825568 lncRNA upstream 80789 57489011 ~ 57489415 (-) True G726714
TU825584 lncRNA upstream 116984 57525206 ~ 57528782 (-) True G726728
TU825587 lncRNA upstream 118022 57526244 ~ 57529878 (-) True G726730
XM_021613096.2 mRNA downstream 82628 57307415 ~ 57325324 (-) True LOC110530212
XM_036985767.1 mRNA downstream 102376 57224058 ~ 57305576 (-) False chd7
XM_036985766.1 mRNA downstream 102388 57224058 ~ 57305564 (-) False chd7
XM_036985768.1 mRNA downstream 102388 57224058 ~ 57305564 (-) False chd7
XM_021613093.2 mRNA downstream 227524 57175872 ~ 57180428 (-) True LOC110530210
XM_021613099.2 mRNA upstream 77019 57485241 ~ 57511592 (-) False LOC110530214
XM_021613100.2 mRNA upstream 77019 57485241 ~ 57511592 (-) False LOC110530214
XM_021613101.2 mRNA upstream 77019 57485241 ~ 57511592 (-) False LOC110530214
XM_021613102.2 mRNA upstream 77019 57485241 ~ 57511592 (-) True LOC110530214
XM_021613103.2 mRNA upstream 106967 57515189 ~ 57532294 (-) True si:dkeyp-13a3.10
TU825404 other downstream 102426 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 270839 57136141 ~ 57137113 (-) True G726496
TU825127 other downstream 567826 56829641 ~ 56840126 (-) True penka
TU823957 other downstream 818681 56588343 ~ 56589271 (-) True G725280
TU823713 other downstream 1021436 56383129 ~ 56386516 (-) True LOC110530186
TU825750 other upstream 397166 57805388 ~ 57811422 (-) True G726885
TU825774 other upstream 411825 57820047 ~ 57846689 (-) True G726900
TU825771 other upstream 454516 57862738 ~ 57863877 (-) True LOC110530228
TU831141 other upstream 4636813 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 4772465 62180687 ~ 62185180 (-) True LOC110530961

Expression Profile