RNA id: TU825568


Basic Information

Item Value
RNA id TU825568
length 341
lncRNA type intronic
GC content 0.50
exon number 2
gene id G726714
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57489011 ~ 57489415 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAAgtgtattgcctgccttgtgagttggagggaATTGGGTGAGGACAAGAGGCaatgaggggaaagagagagtcgAAGGCAGACTAttcctggttgatgtgtcaacaacTATTTGTAAATTatgagcagtcagcagttcacGCAGCACTTAGAGTAGATGGCCTTAGATAGCAAAAAGACTACTAGACCACAGCcgacgcttggcgttgtgatcttaggcttgtgtgtggctgctcggccatggaaacccatttcatgaagcccccGACGAACGGTTCTTGTTCTGACGTTGCTtccggaggcagtttggaactcggtggtgatgtggcaactgaggac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU825544 lncRNA downstream 31151 57457554 ~ 57457860 (-) True G726692
TU825494 lncRNA downstream 69180 57419559 ~ 57419831 (-) True G726653
TU825485 lncRNA downstream 80789 57407952 ~ 57408222 (-) True G726644
TU825480 lncRNA downstream 93454 57395277 ~ 57395557 (-) True G726639
TU825466 lncRNA downstream 122661 57366114 ~ 57366350 (-) True G726625
TU825584 lncRNA upstream 35791 57525206 ~ 57528782 (-) True G726728
TU825587 lncRNA upstream 36829 57526244 ~ 57529878 (-) True G726730
TU825589 lncRNA upstream 37187 57526602 ~ 57530260 (-) True G726731
TU825590 lncRNA upstream 37832 57527247 ~ 57531096 (-) True G726732
TU825596 lncRNA upstream 45597 57535012 ~ 57535456 (-) True G726738
XM_021613096.2 mRNA downstream 163687 57307415 ~ 57325324 (-) True LOC110530212
XM_036985767.1 mRNA downstream 183435 57224058 ~ 57305576 (-) False chd7
XM_036985766.1 mRNA downstream 183447 57224058 ~ 57305564 (-) False chd7
XM_036985768.1 mRNA downstream 183447 57224058 ~ 57305564 (-) False chd7
XM_021613093.2 mRNA downstream 308583 57175872 ~ 57180428 (-) True LOC110530210
XM_021613103.2 mRNA upstream 25774 57515189 ~ 57532294 (-) True si:dkeyp-13a3.10
XM_036985786.1 mRNA upstream 152363 57641778 ~ 57712586 (-) False LOC110530221
XM_036985785.1 mRNA upstream 152363 57641778 ~ 57720678 (-) False LOC110530221
XM_036985783.1 mRNA upstream 152363 57641778 ~ 57720679 (-) False LOC110530221
XM_036985784.1 mRNA upstream 152363 57641778 ~ 57720679 (-) False LOC110530221
TU825404 other downstream 183485 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 351898 57136141 ~ 57137113 (-) True G726496
TU825127 other downstream 648885 56829641 ~ 56840126 (-) True penka
TU823957 other downstream 899740 56588343 ~ 56589271 (-) True G725280
TU823713 other downstream 1102495 56383129 ~ 56386516 (-) True LOC110530186
TU825750 other upstream 315973 57805388 ~ 57811422 (-) True G726885
TU825774 other upstream 330632 57820047 ~ 57846689 (-) True G726900
TU825771 other upstream 373323 57862738 ~ 57863877 (-) True LOC110530228
TU831141 other upstream 4555620 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 4691272 62180687 ~ 62185180 (-) True LOC110530961

Expression Profile