RNA id: TU825590


Basic Information

Item Value
RNA id TU825590
length 485
lncRNA type intronic
GC content 0.30
exon number 2
gene id G726732
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57527247 ~ 57531096 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTAATTTATAGTCAGTGAATCTTTCCAAAACATGTTTCACAGGATAAATACTATGTAACATTTTAAATGAAACATCCTTTACCTTGTTACAATATTTGTTAGCAATTTTCCATGCTTTCCCCCATTGTATATCACCATAGATATCTGACCAAAATAATCTTGCTGAGGGAATTGTAGTATCACAAACAATTCTTCCTAATCTGTTTATTACTACATTTATCTTTGATGTTAATATTGCCAATTAATATATTTTCATGTAAATCTATGTTACTTACATCAACCTCAGAGGAATTTAAAAGAGATACAACCCCCAATTTTACAGAGCTAGTACAACCACTATATAAAGTTTGgactgctttaaaaaaaagtcaCCAAACCCCCCAAAACGTATTGCTTTGAACATAAACTCATGTTCTACAGTGTCAAAAGCTTGATAAAAATCAACAAACATAAGAAAACTATCATCAATGATGAGGTCATTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU825568 lncRNA downstream 37832 57489011 ~ 57489415 (-) True G726714
TU825544 lncRNA downstream 69387 57457554 ~ 57457860 (-) True G726692
TU825494 lncRNA downstream 107416 57419559 ~ 57419831 (-) True G726653
TU825485 lncRNA downstream 119025 57407952 ~ 57408222 (-) True G726644
TU825480 lncRNA downstream 131690 57395277 ~ 57395557 (-) True G726639
TU825596 lncRNA upstream 3916 57535012 ~ 57535456 (-) True G726738
TU825597 lncRNA upstream 5580 57536676 ~ 57536961 (-) True G726739
TU825604 lncRNA upstream 16235 57547331 ~ 57547549 (-) True G726746
TU825614 lncRNA upstream 18320 57549416 ~ 57549712 (-) True G726754
TU825615 lncRNA upstream 20407 57551503 ~ 57551891 (-) True G726755
XM_021613099.2 mRNA downstream 15655 57485241 ~ 57511592 (-) False LOC110530214
XM_021613100.2 mRNA downstream 15655 57485241 ~ 57511592 (-) False LOC110530214
XM_021613101.2 mRNA downstream 15655 57485241 ~ 57511592 (-) False LOC110530214
XM_021613102.2 mRNA downstream 15655 57485241 ~ 57511592 (-) True LOC110530214
XM_021613096.2 mRNA downstream 201923 57307415 ~ 57325324 (-) True LOC110530212
XM_036985786.1 mRNA upstream 110682 57641778 ~ 57712586 (-) False LOC110530221
XM_036985785.1 mRNA upstream 110682 57641778 ~ 57720678 (-) False LOC110530221
XM_036985783.1 mRNA upstream 110682 57641778 ~ 57720679 (-) False LOC110530221
XM_036985784.1 mRNA upstream 110682 57641778 ~ 57720679 (-) False LOC110530221
XR_005052922.1 mRNA upstream 114563 57645659 ~ 57720684 (-) False LOC110530221
TU825404 other downstream 221721 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 390134 57136141 ~ 57137113 (-) True G726496
TU825127 other downstream 687121 56829641 ~ 56840126 (-) True penka
TU823957 other downstream 937976 56588343 ~ 56589271 (-) True G725280
TU823713 other downstream 1140731 56383129 ~ 56386516 (-) True LOC110530186
TU825750 other upstream 274292 57805388 ~ 57811422 (-) True G726885
TU825774 other upstream 288951 57820047 ~ 57846689 (-) True G726900
TU825771 other upstream 331642 57862738 ~ 57863877 (-) True LOC110530228
TU831141 other upstream 4513939 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 4649591 62180687 ~ 62185180 (-) True LOC110530961

Expression Profile