RNA id: TU825596


Basic Information

Item Value
RNA id TU825596
length 445
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G726738
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57535012 ~ 57535456 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtctggatttggagtcacactcaaaattaaagtggaaaaccacactacaggctgatccaactttgatgtaatgtccttaaaacaattcaaaatgaggctcagtagtgtgtgtggcctccacgtgcctgtatgacctcgctacaacgcctgggcatgctcctgatgaggtggcggatggtctcctgaggggtctcctcccagacctggaccaaagcatccgccaactcctggacagtctgtggtgcaacgtggcgttggtggatggagcgagacatgatgtcccagatgtgctcaatgggattcaggtctggggaacgggcagtccatagcatcaatgccttcctcttgcaggaactgctgacacactccagccacttgaggtctagcattgtcttgcattaggaggaacccagggccaaccgcacctgCTTGTgctctcacaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU825590 lncRNA downstream 3916 57527247 ~ 57531096 (-) True G726732
TU825589 lncRNA downstream 4752 57526602 ~ 57530260 (-) True G726731
TU825587 lncRNA downstream 5134 57526244 ~ 57529878 (-) True G726730
TU825584 lncRNA downstream 6230 57525206 ~ 57528782 (-) True G726728
TU825568 lncRNA downstream 45597 57489011 ~ 57489415 (-) True G726714
TU825597 lncRNA upstream 1220 57536676 ~ 57536961 (-) True G726739
TU825604 lncRNA upstream 11875 57547331 ~ 57547549 (-) True G726746
TU825614 lncRNA upstream 13960 57549416 ~ 57549712 (-) True G726754
TU825615 lncRNA upstream 16047 57551503 ~ 57551891 (-) True G726755
TU825617 lncRNA upstream 19597 57555053 ~ 57555686 (-) True G726757
XM_021613103.2 mRNA downstream 2718 57515189 ~ 57532294 (-) True si:dkeyp-13a3.10
XM_021613099.2 mRNA downstream 23420 57485241 ~ 57511592 (-) False LOC110530214
XM_021613100.2 mRNA downstream 23420 57485241 ~ 57511592 (-) False LOC110530214
XM_021613101.2 mRNA downstream 23420 57485241 ~ 57511592 (-) False LOC110530214
XM_021613102.2 mRNA downstream 23420 57485241 ~ 57511592 (-) True LOC110530214
XM_036985786.1 mRNA upstream 106322 57641778 ~ 57712586 (-) False LOC110530221
XM_036985785.1 mRNA upstream 106322 57641778 ~ 57720678 (-) False LOC110530221
XM_036985783.1 mRNA upstream 106322 57641778 ~ 57720679 (-) False LOC110530221
XM_036985784.1 mRNA upstream 106322 57641778 ~ 57720679 (-) False LOC110530221
XR_005052922.1 mRNA upstream 110203 57645659 ~ 57720684 (-) False LOC110530221
TU825404 other downstream 229486 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 397899 57136141 ~ 57137113 (-) True G726496
TU825127 other downstream 694886 56829641 ~ 56840126 (-) True penka
TU823957 other downstream 945741 56588343 ~ 56589271 (-) True G725280
TU823713 other downstream 1148496 56383129 ~ 56386516 (-) True LOC110530186
TU825750 other upstream 269932 57805388 ~ 57811422 (-) True G726885
TU825774 other upstream 284591 57820047 ~ 57846689 (-) True G726900
TU825771 other upstream 327282 57862738 ~ 57863877 (-) True LOC110530228
TU831141 other upstream 4509579 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 4645231 62180687 ~ 62185180 (-) True LOC110530961

Expression Profile