RNA id: TU825614



Basic Information


Item Value
RNA id TU825614
length 297
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G726754
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57549416 ~ 57549712 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GATTACAACTTGTTCAGAATGAGTCTGACGTAATTTCCAGGTCAATGCCTGGAGGTCAGTCAGAATTGGTGTCGAGGAAGTCTGTAAAAGTTTTTTACTACAAGTCACTGTCTTCCACTATTGTAGTGGTGATAGCTATGAAATAGACTTCATACCCATGTTATCCACGGAGGAGCTAACCTCACGACGGAAGTACTCTAAGTATTAGACCAGTCGATCGTGGTTAATGATTCTAATAATTTTCCTCCTGAATGGAGGATTCTATTTATTTGTGACATGTCTGTTAACCATTGGAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU825604 lncRNA downstream 1867 57547331 ~ 57547549 (-) True G726746
TU825597 lncRNA downstream 12455 57536676 ~ 57536961 (-) True G726739
TU825596 lncRNA downstream 13960 57535012 ~ 57535456 (-) True G726738
TU825590 lncRNA downstream 18320 57527247 ~ 57531096 (-) True G726732
TU825589 lncRNA downstream 19156 57526602 ~ 57530260 (-) True G726731
TU825615 lncRNA upstream 1791 57551503 ~ 57551891 (-) True G726755
TU825617 lncRNA upstream 5341 57555053 ~ 57555686 (-) True G726757
TU825618 lncRNA upstream 6260 57555972 ~ 57557012 (-) True G726758
TU825619 lncRNA upstream 7409 57557121 ~ 57557433 (-) True G726759
TU825605 lncRNA upstream 14225 57563937 ~ 57572374 (-) True G726747
XM_021613103.2 mRNA downstream 17122 57515189 ~ 57532294 (-) True si:dkeyp-13a3.10
XM_021613099.2 mRNA downstream 37824 57485241 ~ 57511592 (-) False LOC110530214
XM_036985786.1 mRNA upstream 92066 57641778 ~ 57712586 (-) False LOC110530221
XM_036985785.1 mRNA upstream 92066 57641778 ~ 57720678 (-) False LOC110530221
XM_036985783.1 mRNA upstream 92066 57641778 ~ 57720679 (-) False LOC110530221
XM_036985784.1 mRNA upstream 92066 57641778 ~ 57720679 (-) False LOC110530221
XR_005052922.1 mRNA upstream 95947 57645659 ~ 57720684 (-) False LOC110530221
TU825404 other downstream 243890 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 412303 57136141 ~ 57137113 (-) True G726496
TU825127 other downstream 709290 56829641 ~ 56840126 (-) True penka
TU823957 other downstream 960145 56588343 ~ 56589271 (-) True G725280
TU823713 other downstream 1162900 56383129 ~ 56386516 (-) True LOC110530186
TU825750 other upstream 255676 57805388 ~ 57811422 (-) True G726885
TU825774 other upstream 270335 57820047 ~ 57846689 (-) True G726900
TU825771 other upstream 313026 57862738 ~ 57863877 (-) True LOC110530228
TU831141 other upstream 4495323 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 4630975 62180687 ~ 62185180 (-) True LOC110530961

Expression Profile