RNA id: TU825615


Basic Information

Item Value
RNA id TU825615
length 389
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G726755
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57551503 ~ 57551891 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAAATCATGTAGTTAGGACGCTGACTCCCATCACGTTCCGTTATACATGTGAATCCATATTGTACATATTCGTCCGaccactttctttttttgctaGACATAGTAAGTATGAAGGGATTAAAATATTAAGAAAGAAATCACAAGACGTACCATCACGACAGTCACAAGTCGACTACTGAGCGCACCAAATTCCCTGCAGCACAGATAGGCCAAGCGATGTAGCGTGATCACCTGCAGCCAATGATGGCCAAGCGGGGCGTGTCATCACGAATCATGAGTCGGATATGTGTCTTGACCTCTGCCGAACCCGAGACTGACTCACCGAACCCCTGTGGTTCGATCGAacccaggttaagaaccactggagtggatgtttcggcggttgtcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU825614 lncRNA downstream 1791 57549416 ~ 57549712 (-) True G726754
TU825604 lncRNA downstream 3954 57547331 ~ 57547549 (-) True G726746
TU825597 lncRNA downstream 14542 57536676 ~ 57536961 (-) True G726739
TU825596 lncRNA downstream 16047 57535012 ~ 57535456 (-) True G726738
TU825590 lncRNA downstream 20407 57527247 ~ 57531096 (-) True G726732
TU825617 lncRNA upstream 3162 57555053 ~ 57555686 (-) True G726757
TU825618 lncRNA upstream 4081 57555972 ~ 57557012 (-) True G726758
TU825619 lncRNA upstream 5230 57557121 ~ 57557433 (-) True G726759
TU825605 lncRNA upstream 12046 57563937 ~ 57572374 (-) True G726747
TU825625 lncRNA upstream 30945 57582836 ~ 57583070 (-) True G726765
XM_021613103.2 mRNA downstream 19209 57515189 ~ 57532294 (-) True si:dkeyp-13a3.10
XM_021613099.2 mRNA downstream 39911 57485241 ~ 57511592 (-) False LOC110530214
XM_036985786.1 mRNA upstream 89887 57641778 ~ 57712586 (-) False LOC110530221
XM_036985785.1 mRNA upstream 89887 57641778 ~ 57720678 (-) False LOC110530221
XM_036985783.1 mRNA upstream 89887 57641778 ~ 57720679 (-) False LOC110530221
XM_036985784.1 mRNA upstream 89887 57641778 ~ 57720679 (-) False LOC110530221
XR_005052922.1 mRNA upstream 93768 57645659 ~ 57720684 (-) False LOC110530221
TU825404 other downstream 245977 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 414390 57136141 ~ 57137113 (-) True G726496
TU825127 other downstream 711377 56829641 ~ 56840126 (-) True penka
TU823957 other downstream 962232 56588343 ~ 56589271 (-) True G725280
TU823713 other downstream 1164987 56383129 ~ 56386516 (-) True LOC110530186
TU825750 other upstream 253497 57805388 ~ 57811422 (-) True G726885
TU825774 other upstream 268156 57820047 ~ 57846689 (-) True G726900
TU825771 other upstream 310847 57862738 ~ 57863877 (-) True LOC110530228
TU831141 other upstream 4493144 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 4628796 62180687 ~ 62185180 (-) True LOC110530961

Expression Profile