RNA id: TU825617


Basic Information

Item Value
RNA id TU825617
length 634
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G726757
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57555053 ~ 57555686 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggagaatgtgccctagtgggctaaaccggcatcgcggcttgttagacaaaaagGGGAAATGgaggtcgactaagaagtcactacagagtgataattataacaattgaaatgctaatcctttgcacttgaacgctcactcattcgggaacaattgcaatcaatatacactgctcaaaaaaataaagggaacactaaaataacacatcctagatctgaattaatgaaatattcttattaaatacttttttctttacatagttgaacgtgctgacaacaaaatcacacaaatgatcaatggaaatcaaatttatcaacccatggcggtctggatttggagtcacactcaaaattaaagtggaaaaccacactataggctgatccaactttgatgtaatgtccttaaaacaagtcaaaatgaggctcagtagtgtatgtggcctccacgtgcctgtatgacctccctacaatgcctgggcatgctcctgatgaggtggcggatggtctcctgagggatctcctcccagacctggactaaagcatccgccaactcctggacagtctgtggtgcaacgtggcgttggtggatggagcgagacatgatgtcccagatgtgctcaattggattcaggtctgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU825615 lncRNA downstream 3162 57551503 ~ 57551891 (-) True G726755
TU825614 lncRNA downstream 5341 57549416 ~ 57549712 (-) True G726754
TU825604 lncRNA downstream 7504 57547331 ~ 57547549 (-) True G726746
TU825597 lncRNA downstream 18092 57536676 ~ 57536961 (-) True G726739
TU825596 lncRNA downstream 19597 57535012 ~ 57535456 (-) True G726738
TU825618 lncRNA upstream 286 57555972 ~ 57557012 (-) True G726758
TU825619 lncRNA upstream 1435 57557121 ~ 57557433 (-) True G726759
TU825605 lncRNA upstream 8251 57563937 ~ 57572374 (-) True G726747
TU825625 lncRNA upstream 27150 57582836 ~ 57583070 (-) True G726765
TU825626 lncRNA upstream 27622 57583308 ~ 57583525 (-) True G726766
XM_021613103.2 mRNA downstream 22759 57515189 ~ 57532294 (-) True si:dkeyp-13a3.10
XM_021613099.2 mRNA downstream 43461 57485241 ~ 57511592 (-) False LOC110530214
XM_036985786.1 mRNA upstream 86092 57641778 ~ 57712586 (-) False LOC110530221
XM_036985785.1 mRNA upstream 86092 57641778 ~ 57720678 (-) False LOC110530221
XM_036985783.1 mRNA upstream 86092 57641778 ~ 57720679 (-) False LOC110530221
XM_036985784.1 mRNA upstream 86092 57641778 ~ 57720679 (-) False LOC110530221
XR_005052922.1 mRNA upstream 89973 57645659 ~ 57720684 (-) False LOC110530221
TU825404 other downstream 249527 57286516 ~ 57305526 (-) True chd7
TU825323 other downstream 417940 57136141 ~ 57137113 (-) True G726496
TU825127 other downstream 714927 56829641 ~ 56840126 (-) True penka
TU823957 other downstream 965782 56588343 ~ 56589271 (-) True G725280
TU823713 other downstream 1168537 56383129 ~ 56386516 (-) True LOC110530186
TU825750 other upstream 249702 57805388 ~ 57811422 (-) True G726885
TU825774 other upstream 264361 57820047 ~ 57846689 (-) True G726900
TU825771 other upstream 307052 57862738 ~ 57863877 (-) True LOC110530228
TU831141 other upstream 4489349 62045035 ~ 62048119 (-) False G731764
TU831229 other upstream 4625001 62180687 ~ 62185180 (-) True LOC110530961

Expression Profile